Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0329
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   2.3  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   7.1  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   9.4  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = -1

Query: 534 VCLICE-----FYML*ILPCCLNIRVLVFRYLLLYISISL 430
           +C +C+     F  + I+ C +    +VF +   Y SIS+
Sbjct: 523 LCDVCDSVNRIFGFIIIIGCLIQFNTIVFAFCYCYYSISI 562


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 456 DNERQVLEYLSSKEGSTAYKTHILNK 533
           DN     +  S + G  A+KTH L+K
Sbjct: 256 DNSNSSEKKSSIQHGDDAHKTHHLDK 281


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 597 LSYLPKLLPRPYSIVNSYL 653
           LS    +LP P + +NSYL
Sbjct: 29  LSDTRPMLPYPQNYINSYL 47


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,359
Number of Sequences: 336
Number of extensions: 3388
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)