Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0329
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    60   2e-10
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    54   3e-08
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    39   8e-04
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    35   0.010
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.36 
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    27   2.5  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.4  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    25   7.7  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    25   7.7  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    25   7.7  

>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 9/163 (5%)
 Frame = +3

Query: 213 GDTIGIIPKNPQVEVDFILNHLSLT-SQADLPYTLLLGNKESKIPTHVPVKSTLRQVXXX 389
           G + G++  N + +VD +L  L +   QAD P  +LL     + PT +  + T R++   
Sbjct: 178 GGSFGVMAPNNEEDVDELLQLLHINPDQADAP--VLLKTDGGRWPT-IWAEDTPRELVTT 234

Query: 390 XXXXXXXXXXXXXXA--------ISRYTKEDNERQVLEYLSSKEGSTAYKTHILNKQINI 545
                         A        ++ Y K+D ERQVL +L S+ G  A+   + +  + +
Sbjct: 235 RRELLKWTVEFMSVAPKKQLIRLLAEYAKDDTERQVLLFLVSRLGQRAF-CDLRDHNVTL 293

Query: 546 LDIFTLFPSCKPPIEVLLSYLPKLLPRPYSIVNSYLEDSNAIK 674
           + +   FPS + P++ LL+ LP+L+PR YS+ N     +N ++
Sbjct: 294 ITLLKAFPSVQLPLDHLLTVLPQLMPRWYSLSNDPKVSNNVLE 336


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 44/154 (28%), Positives = 62/154 (40%), Gaps = 7/154 (4%)
 Frame = +3

Query: 204 FKAGDTIGIIPKNPQVEVDFILNHLSLTSQADLPYTLLLGNKESKIPT-------HVPVK 362
           +K G + GI+P N   EV   L HL    Q +L  T +L     + PT            
Sbjct: 202 WKIGGSFGIMPPNSDAEV-LHLAHLLKIPQHELYVTKVLRTNGGRWPTIWGEDKPRCLYT 260

Query: 363 STLRQVXXXXXXXXXXXXXXXXXAISRYTKEDNERQVLEYLSSKEGSTAYKTHILNKQIN 542
           S                       ++ +T    E+ VL  LS      +Y        + 
Sbjct: 261 SLYHIFKWCSDFISKPPTKSLIRLLAEHTLNPVEKSVLLALSDFRQDESYCRICTQSCVT 320

Query: 543 ILDIFTLFPSCKPPIEVLLSYLPKLLPRPYSIVN 644
           + DI   FPSC PP++ L+S LP+L+PR YSI N
Sbjct: 321 LPDILEAFPSCHPPVDHLISALPQLMPRWYSISN 354


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 4/166 (2%)
 Frame = +3

Query: 162 LKLEYRVGDDSNFTFKAGDTIGIIPKNPQVEVDFILNHLSLTSQADLPYTLLLGNKESKI 341
           L LE  + D S   ++ GD   I P NP   VD +L  L L  + D    +   +   K 
Sbjct: 288 LHLELDIAD-SGMRYQTGDYASICPMNPSQAVDDLLEVLGLKEKRDTVIIVKPIDTLDKA 346

Query: 342 PTHVPVKSTLRQVXXXXXXXXXXXXXXXXXAISRYTKEDNERQVLEYLSSKEGSTAYKTH 521
           P   P  +T   V                  I+ +      +Q LE L +      +K +
Sbjct: 347 PVLSP--TTYDTVFRYYYEICGIVSRQLLSFIAPFAPTPESKQELEKLGN--DYDYFKKN 402

Query: 522 ILNKQINILDIFTLF----PSCKPPIEVLLSYLPKLLPRPYSIVNS 647
           +++  +N+  +        P  K P  +LL  +  + PR YSI +S
Sbjct: 403 VVDLHLNLAQVLRRVSPDAPFTKLPFSMLLENMAHMKPRYYSISSS 448


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 31/147 (21%), Positives = 53/147 (36%)
 Frame = +3

Query: 204 FKAGDTIGIIPKNPQVEVDFILNHLSLTSQADLPYTLLLGNKESKIPTHVPVKSTLRQVX 383
           +K GD   + P N  + V+  +  +   S    P  +     E K+P    + +    V 
Sbjct: 208 WKPGDVAVLYPWNDDMSVNSFIECMGWESIKYSPLIISSNVAERKLPWFPNILNVFNLVK 267

Query: 384 XXXXXXXXXXXXXXXXAISRYTKEDNERQVLEYLSSKEGSTAYKTHILNKQINILDIFTL 563
                           A S ++     ++ L+  SS +    Y  +    +  +L+    
Sbjct: 268 YVLSIHSVPSRTFFEMA-SHFSNNKMHKERLQEFSSYKNIDDYYDYTTRPRRTVLETLQE 326

Query: 564 FPSCKPPIEVLLSYLPKLLPRPYSIVN 644
           F S + PIE  L   P +  R YSI N
Sbjct: 327 FKSVQIPIEYALDAFPVIRGRQYSIAN 353


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 159  SLKLEYRVGDDSNFTFKAGDTIGIIPKNPQVEVD 260
            SL  EY +G+D   T K     GIIP++  V  D
Sbjct: 1012 SLNDEYMIGEDPELTRKISPVEGIIPEDANVRFD 1045


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 955

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -3

Query: 517  VLYAVDPSLLLKYSSTCLSLSSFVYLDIANRNNFL---SKHRRSKQ 389
            +++A DPSL +KY S  L     + +    R  FL   SKH  S +
Sbjct: 880  LVFAADPSLCIKYMSNVLDQLPAMTIGQEEREKFLANFSKHCTSSE 925


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +2

Query: 533 TNKHFGYI-HTVSILQATNRSIIILF-TEATA*TIF 634
           T   FGY+ H++S L+ +NR++ +L  + +T  T++
Sbjct: 604 TGFQFGYLPHSISYLRKSNRAVYVLISSNSTLLTVY 639


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/79 (21%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = -3

Query: 544 MFICLFNM*VLYAVDPSLLLKYSSTCLSLSSFVYLDIANRNNFLSKHRRSKQSVNTCLNV 365
           +F C  ++ +L  V+ S+ +K     L+  S +++DI +    L + + +++ ++  L +
Sbjct: 380 LFHCSSDVRILQVVNESMPIKSEFFILTTESVLWMDIQHPQKPLLEWKHNRK-LDPTLKI 438

Query: 364 DLTGT-CVGILLSLFPKSN 311
            +T T    I +S++ + N
Sbjct: 439 TVTATFSQNIYVSVYSQMN 457


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +3

Query: 432 AISRYTKEDNERQVLEYLSSKEGSTAYKTHILNKQINILDIFTLF-PSCKPPIEVLLSYL 608
           A S +   + + +VL+YL     S  Y T+    Q  ILD+ +LF  +C    E+ L   
Sbjct: 197 AFSAFRTPEEQSKVLKYLIRFGNSYPYGTYRQAMQNAILDMASLFEQACLDEFELGLHSR 256

Query: 609 PKLLPRPYSIVNSYLEDSNA 668
              L R +S V       NA
Sbjct: 257 NLDLLRKFSHVLHDFSGPNA 276


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 180 VGDDSNFTFKAGDTIGIIPKNPQVEVDFILNHLSLTSQADLPYTLLLGNKESKI 341
           VG  S  +  +  +I  IPKN +  ++ + N +SL+          +  KES +
Sbjct: 2   VGRGSFSSTSSASSINWIPKNTKTSIESVSNTISLSENGQNQDLETVTTKESNV 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,394
Number of Sequences: 5004
Number of extensions: 57578
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)