Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0329
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0889 + 8753877-8754236,8754995-8755054,8755174-8755250,875... 54 1e-07
09_06_0260 - 21911358-21911438,21911715-21911828,21911911-219120... 42 5e-04
01_06_0610 - 30587269-30587717,30587996-30588212,30588363-305884... 42 5e-04
11_06_0689 - 26294961-26294976,26295271-26295414,26295506-262959... 29 3.4
04_04_0811 - 28246801-28247049,28247161-28247384,28248236-282484... 28 6.0
05_03_0194 + 9547626-9547715,9549235-9549311,9549493-9549564,954... 28 7.9
>08_01_0889 +
8753877-8754236,8754995-8755054,8755174-8755250,
8755481-8755622,8755736-8755772,8755852-8755921,
8756021-8756212,8756321-8756413,8756545-8756773,
8756861-8756944,8757041-8757192,8757279-8757375,
8757576-8757725,8757813-8757890,8757982-8758104,
8758169-8758315,8758418-8758472,8758807-8758874
Length = 737
Score = 53.6 bits (123), Expect = 1e-07
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 7/167 (4%)
Frame = +3
Query: 168 LEYRVGDDSNFTFKAGDTIGIIPKNP-QV--EVDFILNHLS---LTSQADLPYTLLLGNK 329
LE+ + + T++ GD +G+ +N +V E + +L + T AD LG
Sbjct: 334 LEFDIAG-TGLTYETGDHVGVYTENCLEVVEEAERLLGYSPEAFFTIHADKEDGTPLGGG 392
Query: 330 ESKIPTHVPVKSTLRQVXXXXXXXXXXXXXXXXXAISRYTKEDNERQVLEYLSSKEGSTA 509
P P+ T+R A++ Y + E L +L+S G
Sbjct: 393 SLAPPFPSPI--TVRNALARYADLLNSPKKSALVALATYASDSTEADRLRFLASPAGKDE 450
Query: 510 YKTHILNKQINILDIFTLFPSCKPPIEVLLSYL-PKLLPRPYSIVNS 647
Y ++ Q ++L++ FPS KPP+ V + + P+L PR YSI +S
Sbjct: 451 YAQWVVASQRSLLEVMAEFPSAKPPLGVFFAAVAPRLQPRYYSISSS 497
>09_06_0260 -
21911358-21911438,21911715-21911828,21911911-21912033,
21912342-21912419,21912498-21912647,21913505-21913601,
21913679-21913860,21913899-21913982,21914243-21914303,
21914414-21914506,21914588-21914782,21914937-21915006,
21915536-21915572,21915654-21915737,21915828-21915885,
21916008-21916084,21916185-21916244,21916325-21916687
Length = 668
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +3
Query: 510 YKTHILNKQINILDIFTLFPSCKPPIEVLLSYL-PKLLPRPYSIVNS 647
Y I++ Q ++L++ T FPS KPP+ V + + P+L PR YSI +S
Sbjct: 407 YSQWIVSSQRSLLEVMTEFPSAKPPLGVFFAAIAPRLQPRYYSISSS 453
>01_06_0610 -
30587269-30587717,30587996-30588212,30588363-30588482,
30589092-30589202,30589300-30589374,30589940-30590031,
30590121-30590302,30590479-30590570,30591179-30591283,
30591374-30591451,30591553-30591705
Length = 557
Score = 41.9 bits (94), Expect = 5e-04
Identities = 24/81 (29%), Positives = 41/81 (50%)
Frame = +3
Query: 435 ISRYTKEDNERQVLEYLSSKEGSTAYKTHILNKQINILDIFTLFPSCKPPIEVLLSYLPK 614
+S + ++E++ L+Y +S EG + + IL++ FPS + P E L+ P
Sbjct: 298 MSFFATAEHEKEKLQYFASPEGRDDLYQYNQKEGRTILEVLDDFPSVQMPFEWLVQLTPP 357
Query: 615 LLPRPYSIVNSYLEDSNAIKI 677
L R +SI +S L N I +
Sbjct: 358 LKKRAFSISSSPLAKPNQIHL 378
>11_06_0689 -
26294961-26294976,26295271-26295414,26295506-26295909,
26296112-26296261,26296334-26296497,26296526-26296836,
26296948-26297084,26297276-26297416,26297821-26297867,
26297977-26298072,26298168-26298249,26298332-26298472,
26298607-26298702,26298809-26298877,26298959-26299030,
26299201-26299368,26299577-26299711,26299792-26299958,
26301213-26301369
Length = 898
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 433 RYRDIQKKITKDKYSNI*AARKDLQHIKLTY 525
+Y D Q+K KD SN+ + ++HIKL Y
Sbjct: 325 KYFDQQQKHIKDLKSNLATMKSGMEHIKLQY 355
>04_04_0811 -
28246801-28247049,28247161-28247384,28248236-28248435,
28248612-28248888,28249035-28249104
Length = 339
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 226 PIVSPALKVKLLSSPTLYSSFKEI-TFVNVGKV 131
P++SP L +L+ P+LY+ +++ F NV K+
Sbjct: 110 PVLSPFLNPRLMCVPSLYNDLEKVFRFQNVEKI 142
>05_03_0194 +
9547626-9547715,9549235-9549311,9549493-9549564,
9549648-9549719,9550047-9550118,9550199-9550225,
9550226-9550297,9550382-9550453,9550897-9550968,
9551047-9551121,9551226-9551297,9551384-9551449,
9551544-9551609,9551683-9551727,9551822-9551886,
9551971-9552350,9552419-9552545,9552688-9552846,
9552929-9553047,9553182-9553392,9553582-9553762,
9553845-9553995,9554086-9554448
Length = 901
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 141 TLTKVISLKLEYRVGDDSNFTFKAGDTIGIIPKNPQVEVDFILN 272
T +K+ +LK+ D++FT K D +GI+PK + + I+N
Sbjct: 151 TFSKLQNLKILR--SSDNDFTGKIPDYLGIMPKLEDIRIGDIVN 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,646,456
Number of Sequences: 37544
Number of extensions: 295209
Number of successful extensions: 640
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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