Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0329
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)         104   8e-23
SB_25084| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_19908| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)                 30   1.5  
SB_59567| Best HMM Match : Cyclin_N (HMM E-Value=3.3e-07)              29   4.6  
SB_33662| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_52542| Best HMM Match : DUF1279 (HMM E-Value=0.96)                  28   8.1  

>SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)
          Length = 724

 Score =  104 bits (249), Expect = 8e-23
 Identities = 55/168 (32%), Positives = 91/168 (54%), Gaps = 4/168 (2%)
 Frame = +3

Query: 192 SNFTFKAGDTIGIIPKNPQVEVDFILNHLSLTSQADLPYTL--LLGNKE--SKIPTHVPV 359
           S + ++AG++  I   N + EVD I+  L LTS A +PY +  + G K+  + IP ++P 
Sbjct: 321 SGWEYEAGNSFNIYCPNDEGEVDAIIERLGLTSMAQVPYDIQVMSGTKKKTASIPNYIPQ 380

Query: 360 KSTLRQVXXXXXXXXXXXXXXXXXAISRYTKEDNERQVLEYLSSKEGSTAYKTHILNKQI 539
             T+++                   +  +T ++NE++ L+ L SK+G+  Y   +    +
Sbjct: 381 PYTIKESLLTCLDIRMVPRKAFLRTLVEFTHDNNEQRRLQELCSKQGADEYCRFVREPSL 440

Query: 540 NILDIFTLFPSCKPPIEVLLSYLPKLLPRPYSIVNSYLEDSNAIKICF 683
           ++L++ T FPSC PP E LL +LP+L PRPYSI +S LE    +   F
Sbjct: 441 SLLELLTAFPSCFPPFERLLEHLPRLSPRPYSISSSPLEKPGQLNFVF 488


>SB_25084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 4/156 (2%)
 Frame = +3

Query: 192 SNFTFKAGDTIGIIPKNPQVEVDFILNHLSLTSQADLPYTLLLGN-KESKIPTH-VPVKS 365
           S   + AGD + + P N    +D +     L +  DL     L N  E     H  P  +
Sbjct: 332 SGIKYDAGDHVAVYPTN---NLDLVEKFSQLLN-VDLDTVFSLDNVDEDASKKHPFPCPT 387

Query: 366 TLRQVXXXXXXXXXXXXXXXXXAISRYTKEDNERQVLEYLS--SKEGSTAYKTHILNKQI 539
           T R                    ++ Y ++  E++ L  +S  ++E    Y   ++    
Sbjct: 388 TYRTALMHYVDITSTVKTHVLRELAEYARDHEEKEFLMAISDSTEEAKKKYNEWVIQPHR 447

Query: 540 NILDIFTLFPSCKPPIEVLLSYLPKLLPRPYSIVNS 647
           +I+ +    PS KPP++ +L  LP+L  R YSI +S
Sbjct: 448 HIVAVLEDMPSLKPPLDHILELLPRLQCRYYSISSS 483


>SB_19908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
 Frame = -1

Query: 525 ICEFYML*ILPCCLNIRVLVFRYLLLYISISLTGTTF*ANTED--------PNNQSTLVS 370
           I  FY L + PCCL   V +F Y  +YI+I        A+           P++ S + +
Sbjct: 136 IITFYTL-VAPCCL---VTIFCYSRIYIAIKKNSPMRVASPSQKRKPSPRKPDSNSAVET 191

Query: 369 TLI*QVHVLVFYFLYSLKATCKVNLLV 289
            +   + V+VF++  SL     +NL+V
Sbjct: 192 RVTIMIFVVVFWYFTSLAPFNVINLMV 218


>SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)
          Length = 1265

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +3

Query: 453 EDNERQV-LEYLSSKEGSTAY-KTHILNKQINILDIFTLFPSCKPPIEVLLSYLPKLLPR 626
           ED + ++ +E+  SK+G   Y +  +L  Q N + I    P   P IEV+L+ +PK  P+
Sbjct: 651 EDKDGKIGIEFPESKDGKLVYDRNFLLQFQFNPICIEK--PENLPDIEVVLNTMPKGPPK 708

Query: 627 PYS 635
            ++
Sbjct: 709 SFN 711


>SB_59567| Best HMM Match : Cyclin_N (HMM E-Value=3.3e-07)
          Length = 282

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -1

Query: 552 YPKCLFVCLICEFYML*ILPCCLNIRVLVFRYLLLYIS 439
           +P  +   L CEFY+L +L CCL I    +R L  Y+S
Sbjct: 129 FPYRMNQVLECEFYLLEMLDCCL-IIYHPYRPLTQYVS 165


>SB_33662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 102 LQALPEKTVFTLPTLTKVISLKLEYRVGDDSNFTFKAGDTIGII 233
           L  +P  T  TLP   K+     +Y    D + +FK G+ + ++
Sbjct: 46  LPPIPLSTELTLPAERKLFVALYDYEARTDEDLSFKKGEKLEVV 89


>SB_52542| Best HMM Match : DUF1279 (HMM E-Value=0.96)
          Length = 179

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 66  KNMVVIQSLRDTLQALPEKTVFTLPTLTKVISLKLEYRVGDDSNFTFK-AGDTIGIIPKN 242
           K   +++SL  +L ++       L  + K +S  L + VG  +NF FK AG+ +  + +N
Sbjct: 97  KIAAIVKSLGKSLSSVARGVGNGLKAIGKKLSELLPWLVGSIANFVFKAAGEAVKFLGEN 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,025,734
Number of Sequences: 59808
Number of extensions: 367266
Number of successful extensions: 999
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)