Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0329
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    33   0.002
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   2.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.3  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 9/157 (5%)
 Frame = +3

Query: 204  FKAGDTIGIIPKNPQVEVDFILNHLSLTSQADLPYTLLLGNKESKIPTHVP--------- 356
            +K GD +G+   N    V+ IL  +      D+P  L +  K+S  P  +          
Sbjct: 751  YKPGDHLGVFACNRSELVEAILKRVQTPFDPDVPIELQI-QKQSHTPNGIVKTWIAHDRY 809

Query: 357  VKSTLRQVXXXXXXXXXXXXXXXXXAISRYTKEDNERQVLEYLSSKEGSTAYKTHILNKQ 536
            + ++LR +                   +       E+  L  L+S      Y+     K 
Sbjct: 810  LPNSLRILLKRFLDITTPPTPNLLRYFASIATNPKEQAQLNLLASDPA--VYEDWRHWKF 867

Query: 537  INILDIFTLFPSCKPPIEVLLSYLPKLLPRPYSIVNS 647
             N++++   FPS +P   +LL +L  L PR YSI +S
Sbjct: 868  PNLVEVLDEFPSVRPFAPLLLLHLTPLQPRFYSISSS 904


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 225 GIIPKNPQVEVDFILNHLSLTSQADLPYTLLLGNKESKIPTHVPVKSTLRQV 380
           GI+ KN +V+V   L HL  + Q     T  L NK   I    P +   + V
Sbjct: 67  GILDKNAEVDVQKALRHLPRSMQDS---TKKLFNKCKSIQNEDPCEKAYQLV 115


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 166 NSNTEWEMIVISLSRLVI 219
           N+NTEWE++ +S S   I
Sbjct: 203 NNNTEWEIVHMSHSESTI 220


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 84  QSLRDTLQALPEKTVFTLPTLTKVISLKLEYRVGDDSN 197
           QS   T +  P+K   T  T   VIS + E +  ++ N
Sbjct: 781 QSPNSTKETTPKKERKTATTTQPVISSRKEQKKSEEKN 818


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 461 RKTSTRIFKQQGRIYSI*NSHIKQTNKH 544
           R+ S R  K  G +Y + N H+   N H
Sbjct: 262 RRDSRR--KNYGGVYHLDNHHVHHANHH 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,343
Number of Sequences: 438
Number of extensions: 4024
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)