Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0328
         (595 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    24   1.1  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    24   1.1  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    24   1.1  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    23   1.5  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    23   2.6  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    23   2.6  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -3

Query: 389 PPFFPMRDLCMCGMTPPPAIVAFMRLSNSSSPLIASCKCRGVIRFTFKSL 240
           P  FP         +P PA  +    SN+SS L  +C   G   FT K L
Sbjct: 216 PAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSLNCLNTGRTNFTNKQL 265



 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 353 GMTPPPAIVAFMRLSNSSSP 294
           G+ PP  I A +  SNS+SP
Sbjct: 315 GLIPPEPISASLSTSNSNSP 334


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -3

Query: 389 PPFFPMRDLCMCGMTPPPAIVAFMRLSNSSSPLIASCKCRGVIRFTFKSL 240
           P  FP         +P PA  +    SN+SS L  +C   G   FT K L
Sbjct: 5   PAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSLNCLNTGRTNFTNKQL 54



 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 353 GMTPPPAIVAFMRLSNSSSP 294
           G+ PP  I A +  SNS+SP
Sbjct: 104 GLIPPEPISASLSTSNSNSP 123


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -3

Query: 389 PPFFPMRDLCMCGMTPPPAIVAFMRLSNSSSPLIASCKCRGVIRFTFKSL 240
           P  FP         +P PA  +    SN+SS L  +C   G   FT K L
Sbjct: 5   PAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSLNCLNTGRTNFTNKQL 54



 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 353 GMTPPPAIVAFMRLSNSSSP 294
           G+ PP  I A +  SNS+SP
Sbjct: 104 GLIPPEPISASLSTSNSNSP 123


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 326 QLSLAEASSHTYTNLSLERKAVLVHPFNF 412
           Q  +  +S++    LS++R   + HP NF
Sbjct: 126 QAVVTYSSTYVLVALSIDRYDAITHPMNF 154


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/10 (70%), Positives = 8/10 (80%), Gaps = 2/10 (20%)
 Frame = +1

Query: 538 CD--WNCWSG 561
           CD  WNCW+G
Sbjct: 108 CDVFWNCWNG 117


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/10 (70%), Positives = 8/10 (80%), Gaps = 2/10 (20%)
 Frame = +1

Query: 538 CD--WNCWSG 561
           CD  WNCW+G
Sbjct: 108 CDVFWNCWNG 117


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,907
Number of Sequences: 336
Number of extensions: 2896
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)