Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0328
(595 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g54560.1 68416.m06037 histone H2A.F/Z identical to GI:2407800 194 5e-50
At2g38810.3 68415.m04767 histone H2A, putative strong similarity... 193 9e-50
At2g38810.2 68415.m04766 histone H2A, putative strong similarity... 193 9e-50
At2g38810.1 68415.m04765 histone H2A, putative strong similarity... 193 9e-50
At1g52740.1 68414.m05962 histone H2A, putative similar to histon... 192 1e-49
At4g13570.1 68417.m02114 histone H2A, putative similar to histon... 140 8e-34
At3g20670.1 68416.m02616 histone H2A, putative strong similarity... 135 2e-32
At5g54640.1 68418.m06803 histone H2A identical to histone H2A Ar... 134 6e-32
At1g51060.1 68414.m05740 histone H2A, putative similar to histon... 133 7e-32
At4g27230.1 68417.m03910 histone H2A, putative strong similarity... 132 1e-31
At1g08880.1 68414.m00988 histone H2A, putative Strong similarity... 131 3e-31
At1g54690.1 68414.m06235 histone H2A, putative strong similarity... 130 7e-31
At5g02560.1 68418.m00190 histone H2A, putative similar to histon... 124 3e-29
At5g59870.1 68418.m07507 histone H2A, putative similar to histon... 122 2e-28
At5g27670.1 68418.m03317 histone H2A, putative similar to histon... 120 6e-28
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 31 0.44
At4g19980.1 68417.m02925 expressed protein ; expression support... 30 1.0
At3g02650.1 68416.m00256 pentatricopeptide (PPR) repeat-containi... 30 1.0
At4g27840.1 68417.m03998 expressed protein 30 1.3
At5g12970.1 68418.m01487 C2 domain-containing protein contains I... 29 2.3
At1g28490.1 68414.m03503 syntaxin 61 (SYP61) / osmotic stess-sen... 29 3.1
At3g57880.1 68416.m06452 C2 domain-containing protein contains I... 28 4.1
At1g51570.1 68414.m05804 C2 domain-containing protein contains I... 28 4.1
At5g16660.1 68418.m01950 expressed protein 28 5.4
At5g20630.1 68418.m02450 germin-like protein (GER3) identical to... 27 7.1
At3g23295.1 68416.m02938 expressed protein 27 9.4
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro... 27 9.4
>At3g54560.1 68416.m06037 histone H2A.F/Z identical to GI:2407800
Length = 136
Score = 194 bits (472), Expect = 5e-50
Identities = 93/106 (87%), Positives = 100/106 (94%)
Frame = +1
Query: 64 KAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASK 243
K +SRSARAG+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASK
Sbjct: 27 KPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASK 86
Query: 244 DLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 381
DLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct: 87 DLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 132
>At2g38810.3 68415.m04767 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 193 bits (470), Expect = 9e-50
Identities = 91/106 (85%), Positives = 101/106 (95%)
Frame = +1
Query: 64 KAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASK 243
K++SRS+RAG+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASK
Sbjct: 27 KSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASK 86
Query: 244 DLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 381
DLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 87 DLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
>At2g38810.2 68415.m04766 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 193 bits (470), Expect = 9e-50
Identities = 91/106 (85%), Positives = 101/106 (95%)
Frame = +1
Query: 64 KAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASK 243
K++SRS+RAG+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASK
Sbjct: 27 KSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASK 86
Query: 244 DLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 381
DLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 87 DLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
>At2g38810.1 68415.m04765 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 193 bits (470), Expect = 9e-50
Identities = 91/106 (85%), Positives = 101/106 (95%)
Frame = +1
Query: 64 KAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASK 243
K++SRS+RAG+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASK
Sbjct: 27 KSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASK 86
Query: 244 DLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 381
DLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 87 DLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
>At1g52740.1 68414.m05962 histone H2A, putative similar to histone
H2A.F/Z Arabidopsis thaliana GI:2407800; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 134
Score = 192 bits (468), Expect = 1e-49
Identities = 92/106 (86%), Positives = 101/106 (95%)
Frame = +1
Query: 64 KAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASK 243
K ++RS+RAGLQFPVGR+HR LK R+T+HGRVGATAAVY+AAILEYLTAEVLELAGNASK
Sbjct: 25 KPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASK 84
Query: 244 DLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 381
DLKVKRI+PRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct: 85 DLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 130
>At4g13570.1 68417.m02114 histone H2A, putative similar to histone
H2A.F/Z from Arabidopsis thaliana GI:2407800, histone
H2A.F/Z Strongylocentrotus purpuratus SP|P08991, histone
H2A variant Drosophila melanogaster SP|P08985; contains
Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 118
Score = 140 bits (338), Expect = 8e-34
Identities = 67/91 (73%), Positives = 73/91 (80%)
Frame = +1
Query: 91 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 270
G F V RIH+ LKNR ++H VGAT VY +ILEYLT EVL+LA N SKDLKVKRITP
Sbjct: 28 GEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITP 87
Query: 271 RHLQLAIRGDEELDSLIKATIAGGGVIPHIH 363
RHLQLAIRGDEELD+LIK TI GG VIPHIH
Sbjct: 88 RHLQLAIRGDEELDTLIKGTIIGGSVIPHIH 118
>At3g20670.1 68416.m02616 histone H2A, putative strong similarity to
histone H2A GB:AAF64418 GI:7595337 from Arabidopsis
thaliana, Triticum aestivum GI:536892; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 132
Score = 135 bits (326), Expect = 2e-32
Identities = 71/114 (62%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Frame = +1
Query: 64 KAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASK 243
K+ SRS++AGLQFPVGRI R LKN + RVGA A VY AA+LEYL AEVLELAGNA++
Sbjct: 15 KSTSRSSKAGLQFPVGRIARFLKNGKYAT-RVGAGAPVYLAAVLEYLAAEVLELAGNAAR 73
Query: 244 DLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 402
D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 74 DNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGASKP 127
>At5g54640.1 68418.m06803 histone H2A identical to histone H2A
Arabidopsis thaliana GI:7595337
Length = 130
Score = 134 bits (323), Expect = 6e-32
Identities = 71/114 (62%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Frame = +1
Query: 64 KAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASK 243
KA SRS++AGLQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++
Sbjct: 15 KATSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAAR 73
Query: 244 DLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 402
D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 74 DNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASKP 127
>At1g51060.1 68414.m05740 histone H2A, putative similar to histone
H2A GI:7595337 from Arabidopsis thaliana, Triticum
aestivum GI:536892, Picea abies SP|P35063; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 132
Score = 133 bits (322), Expect = 7e-32
Identities = 71/117 (60%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Frame = +1
Query: 55 SQAKAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 234
S KA +RS++AGLQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGN
Sbjct: 12 SAKKATTRSSKAGLQFPVGRIARFLKKGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGN 70
Query: 235 ASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 402
A++D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 71 AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASKP 127
>At4g27230.1 68417.m03910 histone H2A, putative strong similarity to
histone H2A Arabidopsis thaliana GI:7595337, Triticum
aestivum GI:536892, Picea abies SP|P35063; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 131
Score = 132 bits (320), Expect = 1e-31
Identities = 70/114 (61%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Frame = +1
Query: 64 KAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASK 243
K+ SRS++AGLQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++
Sbjct: 15 KSTSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAAR 73
Query: 244 DLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 402
D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 74 DNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSKP 127
>At1g08880.1 68414.m00988 histone H2A, putative Strong similarity to
histone H2A Cicer arietinum SP|O65759, Picea abies
SP|P35063; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4; ESTs gb|ATTS3874,gb|T46627,gb|T14194 come
from this gene
Length = 142
Score = 131 bits (317), Expect = 3e-31
Identities = 68/110 (61%), Positives = 85/110 (77%), Gaps = 1/110 (0%)
Frame = +1
Query: 64 KAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASK 243
K+VSRS++AGLQFPVGRI R LK+ + RVGA A VY +A+LEYL AEVLELAGNA++
Sbjct: 21 KSVSRSSKAGLQFPVGRIARFLKSGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAAR 79
Query: 244 DLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 390
D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+ K G
Sbjct: 80 DNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129
>At1g54690.1 68414.m06235 histone H2A, putative strong similarity to
histone H2A GI:3204129 SP|O65759 from Cicer arietinum,
Picea abies SP|P35063; contains Pfam profile PF00125
Core histone H2A/H2B/H3/H4
Length = 142
Score = 130 bits (314), Expect = 7e-31
Identities = 68/110 (61%), Positives = 84/110 (76%), Gaps = 1/110 (0%)
Frame = +1
Query: 64 KAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASK 243
K+VSRS++AGLQFPVGRI R LK + RVGA A VY +A+LEYL AEVLELAGNA++
Sbjct: 21 KSVSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAAR 79
Query: 244 DLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 390
D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+ K G
Sbjct: 80 DNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129
>At5g02560.1 68418.m00190 histone H2A, putative similar to histone
H2A from Pisum sativum SP|P25470, Zea mays SP|P40280,
Petroselinum crispum SP|P19177; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 153
Score = 124 bits (300), Expect = 3e-29
Identities = 68/113 (60%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Frame = +1
Query: 64 KAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASK 243
K VSRS ++GLQFPVGRI R+LK S RVG A VY AA+LEYL AEVLELAGNA++
Sbjct: 23 KPVSRSVKSGLQFPVGRIGRYLKKGRYSK-RVGTGAPVYLAAVLEYLAAEVLELAGNAAR 81
Query: 244 DLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGGPGA 399
D K RI PRH+ LA+R DEEL +L+K TIA GGV+P+I+ L+ KK A
Sbjct: 82 DNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAA 134
>At5g59870.1 68418.m07507 histone H2A, putative similar to histone
H2A Petroselinum crispum SP|P19177, Lycopersicon
esculentum SP|P25469, Zea mays SP|P40280; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 122 bits (293), Expect = 2e-28
Identities = 66/110 (60%), Positives = 80/110 (72%), Gaps = 1/110 (0%)
Frame = +1
Query: 58 QAKAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNA 237
+ K+VS+S +AGLQFPVGRI R LK + R+G A VY AA+LEYL AEVLELAGNA
Sbjct: 21 KTKSVSKSMKAGLQFPVGRITRFLKKGRYAQ-RLGGGAPVYMAAVLEYLAAEVLELAGNA 79
Query: 238 SKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 384
++D K RI PRHL LAIR DEEL L+ TIA GGV+P+I+ L+ KK
Sbjct: 80 ARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKK 129
>At5g27670.1 68418.m03317 histone H2A, putative similar to histone
H2A Lycopersicon esculentum SP|P25469, Pisum sativum
SP|P25470, Petroselinum crispum SP|P19177; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 120 bits (290), Expect = 6e-28
Identities = 66/108 (61%), Positives = 80/108 (74%), Gaps = 1/108 (0%)
Frame = +1
Query: 64 KAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASK 243
K+VS+S +AGLQFPVGRI R+LK + R G+ A VY AA+LEYL AEVLELAGNA++
Sbjct: 24 KSVSKSVKAGLQFPVGRIARYLKKGRYAL-RYGSGAPVYLAAVLEYLAAEVLELAGNAAR 82
Query: 244 DLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 384
D K RI PRHL LAIR DEEL L+ TIA GGV+P+I+ L+ KK
Sbjct: 83 DNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKK 130
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +1
Query: 112 RIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAI 291
R+ RH HG GA AAI +YL +V + D +R+ R +I
Sbjct: 193 RVGRHWMRYYLLHGLPGAGKTSLVAAIAKYLNFDVYNITQGVKTDFDTRRLIRRVEDSSI 252
Query: 292 RGDEELDSLIKAT 330
E++D+ ++ +
Sbjct: 253 LLVEDIDTSLEGS 265
>At4g19980.1 68417.m02925 expressed protein ; expression supported
by MPSS
Length = 127
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = +3
Query: 159 RSYGSSLFCRYFGISYSRGFGVGGKCV*RFKSEAYY 266
R GSSL CRY +SYS F GG C E YY
Sbjct: 57 RRQGSSLQCRYDPMSYSLNFD-GGACGTLPDDEDYY 91
>At3g02650.1 68416.m00256 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1077
Score = 30.3 bits (65), Expect = 1.0
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 49 W*SQAKAVSRSARAGLQFPVGRIHRHLKNR-TTSHGRVGATAAVYSAAILEYLTAEVLEL 225
W +K+V + L + ++R+ R GR+ S IL +L A +L +
Sbjct: 450 WNGMSKSVRLTKVGFLDKTIEDVNRYYTGRWKVKIGRLVEVYVYGSWQILAFLAAVLLLI 509
Query: 226 AGNASKDLKVKRITPRHLQ 282
+ NAS++L V RI+ + Q
Sbjct: 510 SQNASRNLAVTRISKKKTQ 528
>At4g27840.1 68417.m03998 expressed protein
Length = 260
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 193 LEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR-GDEELDSLIKATIAGGGVIPHIHKS 369
L+ + AE+ + GN +KDL+++ +PR + I+ ++ LDS GG ++P + K
Sbjct: 117 LDPVFAEIAAIGGNHNKDLELEFGSPRSIAREIKSNNQSLDS--SKGRKGGALMPLLGKP 174
Query: 370 L 372
L
Sbjct: 175 L 175
>At5g12970.1 68418.m01487 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 769
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 2/18 (11%)
Frame = +3
Query: 327 NYRWRRRHPTH--TQISH 374
N+RWR RHP H T++SH
Sbjct: 628 NFRWRPRHPPHMDTRLSH 645
>At1g28490.1 68414.m03503 syntaxin 61 (SYP61) / osmotic
stess-sensitive mutant 1 (OSM1) identical to SP|Q946Y7
Syntaxin 61 (AtSYP61) (Osmotic stess-sensitive mutant 1)
{Arabidopsis thaliana}; identical to cDNA syntaxin of
plants 61 (SYP61) GI:16041649
Length = 245
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 229 GNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 384
G D V+ + R + L + DEELD L K+ GGV IH L+ ++
Sbjct: 137 GGRDDDGFVQSESDRQMLLIKQQDEELDELSKSVQRIGGVGLTIHDELVAQE 188
>At3g57880.1 68416.m06452 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 773
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
Frame = +3
Query: 330 YRWRRRHPTH--TQISH 374
YRWR RHP H T++SH
Sbjct: 633 YRWRPRHPPHMDTRLSH 649
>At1g51570.1 68414.m05804 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 776
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
Frame = +3
Query: 330 YRWRRRHPTH--TQISH 374
YRWR RHP H T++SH
Sbjct: 636 YRWRPRHPPHMDTRLSH 652
>At5g16660.1 68418.m01950 expressed protein
Length = 168
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 474 LCRCVTTAGIKCSIILSSHNLKLNGCTRTAFLSN 373
+ C+ TA + S + SH +K NG + T LS+
Sbjct: 1 MASCIATAPLSLSGVSQSHYVKANGLSTTTKLSS 34
>At5g20630.1 68418.m02450 germin-like protein (GER3) identical to
germin-like protein subfamily 3 member 3 [SP|P94072]
Length = 211
Score = 27.5 bits (58), Expect = 7.1
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 217 LELAGNASKDLKVKRITPRHLQLAIRGDEELD-SLIKATIAGGGVIP-HIH 363
L AGN S +K +TP A G L SL + +AGGGVIP H H
Sbjct: 57 LGTAGNTSNIIKAA-VTPAFAP-AYAGINGLGVSLARLDLAGGGVIPLHTH 105
>At3g23295.1 68416.m02938 expressed protein
Length = 74
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 581 TYSYIFSPDQQFQSHHCPLH 522
T++Y+ S D Q HH P+H
Sbjct: 16 THTYVRSSDTQTHQHHVPVH 35
>At2g25050.1 68415.m02996 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 1111
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -3
Query: 404 TGAPGPPFFPMRDLCMCGMTPPPAIVAFMRLSNSSSPLIASCKCRG 267
T +P PP P+R L PPP ++ +R + S S S +G
Sbjct: 555 TSSPLPPLKPLRILSRPPPPPPPPPISSLRSTPSPSSTSNSIATQG 600
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,472,043
Number of Sequences: 28952
Number of extensions: 260999
Number of successful extensions: 627
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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