Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0326
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    54   2e-08
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    34   0.019
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    27   1.7  
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    27   2.9  
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    26   3.8  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    26   3.8  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   6.7  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    25   6.7  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    25   8.8  

>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 21/33 (63%), Positives = 27/33 (81%)
 Frame = +1

Query: 1   LGWAGVWKGLGPRIVMIGTLTALQWFIYDAVKV 99
           +G++G+W GLG RIVMIGTLT  QW IYD+ K+
Sbjct: 270 IGFSGLWNGLGVRIVMIGTLTGAQWLIYDSFKI 302


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 33.9 bits (74), Expect = 0.019
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 4   GWAGVWKGLGPRIVMIGTLTALQWFIYDAVKVWL 105
           G+ G++KGL P ++ +    A+ + +Y+  K WL
Sbjct: 390 GFRGLYKGLSPNLLKVAPSVAISYLVYENCKKWL 423


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 4   GWAGVWKGLGPRIVMIGTLTALQWFIYDAVK 96
           G    +KG+ PR+V+    TA+ W  Y+A K
Sbjct: 261 GIPSFFKGIRPRMVVAMPATAVSWAAYEAGK 291


>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 4   GWAGVWKGLGPRIVMIGTLTALQWFIYDAVK 96
           G  G+++G GP +V I     L + +YD +K
Sbjct: 190 GLRGLYRGFGPSVVGIVVYRGLYFGMYDTLK 220


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 4   GWAGVWKGLGPRIVMIGTLTALQWFIYDAV 93
           G  G+++G GPRI    + ++L +  Y+ +
Sbjct: 296 GLLGLFRGFGPRIFWTSSQSSLMFVFYEGI 325


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 390 ILTQFRIFLEIVQLLMRKDEVSNISRYIDSLNN 292
           I +QF  FL+I+ L +RK  +  + RY   +NN
Sbjct: 675 IFSQFTTFLDIIDLHLRKAGIGFV-RYDGRMNN 706


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 309 IDSLNNSRVVLKLNNK*FAGNVSRSVFVHR 220
           ++++NNSR    L  K F+  +S S F+HR
Sbjct: 177 LENVNNSRQDQFLPYKTFSSTISNSDFLHR 206


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 141 LWHRGWRRPGHPQPDLDGVIDE 76
           + +RGWR     QP  + +IDE
Sbjct: 303 MMNRGWRTSNTKQPSYEEIIDE 324


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -3

Query: 387 LTQFRIFLEIVQLLMRKDEVSNISRYIDSLNNSRVVLKLNNK*FAGNVSRSVFV 226
           LT FRIFL+ +  L   D++S  S    ++   ++   LN K  A N + S  V
Sbjct: 502 LTLFRIFLQGLYALRDFDQISTSSLQTFTMLWKKLSTSLNMKEDAQNTAPSTCV 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,708
Number of Sequences: 5004
Number of extensions: 38218
Number of successful extensions: 93
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)