Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0326
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0755 + 5648872-5649471,5650092-5650453,5650576-5650619,565... 42 4e-04
02_05_0867 - 32338313-32338331,32338372-32338496,32338972-323391... 42 4e-04
04_04_0045 + 22337089-22337385,22338437-22338715,22338728-223387... 41 7e-04
03_02_0454 + 8626832-8627134,8627255-8627606,8627705-8627748,862... 41 7e-04
09_04_0372 + 17026551-17026778,17027469-17027830,17027925-170279... 40 0.001
12_02_0618 - 21262021-21262117,21262429-21262466,21262933-212629... 33 0.24
11_08_0097 + 28330565-28330645,28330768-28330986,28331066-283311... 29 2.3
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421... 29 2.3
10_08_1015 - 22255135-22255693,22256437-22256836,22257938-222583... 29 3.0
03_02_0469 + 8720119-8720199,8720295-8720372,8720496-8720570,872... 29 3.0
03_02_0646 + 10141967-10142476,10143721-10144254 29 3.9
03_02_0681 + 10358224-10359006,10359162-10359272,10360445-10360648 27 9.1
>06_01_0755 +
5648872-5649471,5650092-5650453,5650576-5650619,
5651324-5651538,5651643-5651767,5651862-5651931
Length = 471
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/31 (64%), Positives = 21/31 (67%)
Frame = +1
Query: 7 WAGVWKGLGPRIVMIGTLTALQWFIYDAVKV 99
W +GL RIVMIGTLT QW IYDA KV
Sbjct: 415 WGLFTRGLPLRIVMIGTLTGAQWGIYDAFKV 445
>02_05_0867 -
32338313-32338331,32338372-32338496,32338972-32339186,
32340043-32340086,32340187-32340548,32341357-32341650
Length = 352
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/31 (64%), Positives = 21/31 (67%)
Frame = +1
Query: 7 WAGVWKGLGPRIVMIGTLTALQWFIYDAVKV 99
W +GL RIVMIGTLT QW IYDA KV
Sbjct: 313 WGLFTRGLPLRIVMIGTLTGAQWGIYDAFKV 343
>04_04_0045 +
22337089-22337385,22338437-22338715,22338728-22338798,
22338883-22338926,22340670-22340884,22340958-22341082,
22341142-22341220,22341278-22341367
Length = 399
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = +1
Query: 7 WAGVWKGLGPRIVMIGTLTALQWFIYDAVKV 99
W +GL RIVMIGTLT QW +YDA KV
Sbjct: 310 WGLFTRGLPLRIVMIGTLTGAQWGLYDAFKV 340
>03_02_0454 +
8626832-8627134,8627255-8627606,8627705-8627748,
8629014-8629035,8629136-8629350,8629468-8629592,
8629681-8629756
Length = 378
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +1
Query: 7 WAGVWKGLGPRIVMIGTLTALQWFIYDAVKVWL 105
W + +GL RI+M+GTLT QW YDA KV++
Sbjct: 320 WGLLTRGLPLRIIMVGTLTGAQWATYDAFKVFV 352
>09_04_0372 +
17026551-17026778,17027469-17027830,17027925-17027968,
17028079-17028293,17028405-17028529,17028617-17028692
Length = 349
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +1
Query: 7 WAGVWKGLGPRIVMIGTLTALQWFIYDAVKV 99
W +GL RI+MIGTLT QW IYD+ KV
Sbjct: 291 WGLFTRGLPLRILMIGTLTGTQWVIYDSFKV 321
>12_02_0618 -
21262021-21262117,21262429-21262466,21262933-21262986,
21263274-21263438,21263523-21263759,21263857-21263918,
21264543-21264656,21264816-21264942,21266200-21266218,
21266338-21266428,21266932-21267094,21267182-21267330,
21268147-21268287,21268368-21268533,21268568-21268631,
21268729-21269084,21269759-21269977,21270328-21270433,
21270713-21270942
Length = 865
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 4 GWAGVWKGLGPRIVMIGTLTALQWFIYDAVK 96
G +WKG+GP + G LTA Q YD K
Sbjct: 772 GVKALWKGVGPAMARAGCLTASQMATYDEAK 802
>11_08_0097 +
28330565-28330645,28330768-28330986,28331066-28331144,
28331222-28331355,28331447-28331545,28331638-28331742,
28332377-28332451,28333671-28333757,28333854-28333889
Length = 304
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 4 GWAGVWKGLGPRIVMIGTLTALQWFIYDAVK 96
G+A +W G+GP + + A + YD VK
Sbjct: 173 GFAALWTGIGPNVARNAIINAAELASYDQVK 203
>05_05_0034 - 21741148-21741275,21741890-21741928,21742007-21742121,
21742227-21742292,21743213-21743371,21743573-21743609,
21743757-21744194,21744735-21744817,21744920-21744956,
21745146-21745214,21745316-21745407,21745481-21745565,
21745903-21745982,21746327-21746724,21746813-21747717,
21747825-21747915,21748617-21750680,21750681-21750749,
21750850-21751273,21751644-21751763
Length = 1832
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 158 SKPKRPRTNEKPSLENFNY 214
SKPK+PRT K + ENF++
Sbjct: 1284 SKPKKPRTTSKKNSENFDW 1302
>10_08_1015 -
22255135-22255693,22256437-22256836,22257938-22258371,
22259586-22259977
Length = 594
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 4 GWAGVWKGLGPRIVMIGTLTALQWFIYDAVKVWL 105
G G++KGLGP + AL + +Y+A+K +L
Sbjct: 463 GVGGLFKGLGPTLAREVPGNALMFGVYEAIKQYL 496
>03_02_0469 +
8720119-8720199,8720295-8720372,8720496-8720570,
8720666-8720796,8720948-8721002,8721107-8721217,
8721538-8721606,8721687-8721794,8722106-8722174,
8722266-8722320,8722499-8722701
Length = 344
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 4 GWAGVWKGLGPRIVMIGTLTALQWFIYDAV 93
G+ G WKG+ P ++M+ A+Q+ +Y+ +
Sbjct: 186 GFLGFWKGVVPALIMVSN-PAIQFMLYETL 214
>03_02_0646 + 10141967-10142476,10143721-10144254
Length = 347
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 4 GWAGVWKGLGPRIVMIGTLTALQWFIYDAV 93
G +WKGL PR++ I A+ W + D V
Sbjct: 304 GLRALWKGLLPRLMRIPPGQAIMWAVADQV 333
>03_02_0681 + 10358224-10359006,10359162-10359272,10360445-10360648
Length = 365
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 4 GWAGVWKGLGPRIVMIGTLTALQWFIYDAVK 96
G+AG+ +G PR++ A+ W Y+A K
Sbjct: 323 GYAGLMRGWKPRMLFHAPAAAICWSTYEASK 353
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,436,388
Number of Sequences: 37544
Number of extensions: 241028
Number of successful extensions: 750
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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