Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0326
(620 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_14194| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88) 31 0.57
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88) 31 0.57
SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 31 1.00
SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 29 2.3
SB_14513| Best HMM Match : rve (HMM E-Value=0.14) 29 3.0
SB_53298| Best HMM Match : Keratin_B2 (HMM E-Value=3.9) 29 4.0
SB_56578| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1) 28 5.3
SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24) 28 5.3
SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05) 28 5.3
SB_47038| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_36025| Best HMM Match : LHC (HMM E-Value=2.9) 28 5.3
SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0) 28 5.3
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012) 28 5.3
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 28 5.3
SB_5338| Best HMM Match : rve (HMM E-Value=0.0034) 28 7.0
SB_1433| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028) 27 9.3
SB_44641| Best HMM Match : rve (HMM E-Value=1.9e-19) 27 9.3
SB_38547| Best HMM Match : COX5B (HMM E-Value=2.5) 27 9.3
SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9) 27 9.3
SB_16283| Best HMM Match : Pox_A32 (HMM E-Value=0.012) 27 9.3
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 9.3
SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47) 27 9.3
SB_10797| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 31.9 bits (69), Expect = 0.43
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 4 GWAGVWKGLGPRIVMIGTLTALQWFIYDAVKVWL 105
G+ GV+KGL ++ G+ +++F+Y +K WL
Sbjct: 191 GFFGVYKGLTATVIKQGSNQMIRFFVYSNLKSWL 224
>SB_14194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1198
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDEPLQRG 61
W R R P HP+PDL+ +DEP G
Sbjct: 844 WRRELRAPNHPRPDLN-TLDEPKPEG 868
>SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
Length = 669
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDEPLQRG 61
W RG R P HP+PDL+ +DE G
Sbjct: 422 WRRGSRAPNHPRPDLN-TLDESKPEG 446
>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
Length = 953
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDEPLQRG 61
W RG R P HP+PDL+ +DE G
Sbjct: 622 WRRGSRAPNHPRPDLN-TLDESKPEG 646
>SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 31.1 bits (67), Expect = 0.75
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDEPLQRG---EGTD 49
W RG R P HP+PDL+ +DE G GTD
Sbjct: 486 WWRGSRAPSHPRPDLN-TLDESEPEGAWQSGTD 517
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 30.7 bits (66), Expect = 1.00
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 4 GWAGVWKGLGPRIVMIGTLTALQWFIYDAVK 96
G G+WKG+ P + + T+ + +YD++K
Sbjct: 175 GMKGLWKGVFPNMARLCTVNVTELVVYDSIK 205
>SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1140
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDEPLQRG 61
W RG R P HP+PDL+ +DE G
Sbjct: 974 WWRGSRAPSHPRPDLN-TLDESEPEG 998
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 4 GWAGVWKGLGPRIVMIGTLTALQWFIYDAVKV 99
G + +W+GL P +VM T + + +YD +K+
Sbjct: 75 GLSSLWRGLPPTMVMAVPNTVIYFTLYDQLKI 106
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 4 GWAGVWKGLGPRIVMIGTLTALQWFIYDAV 93
GW G++ GLG ++ TA+ +F Y+ V
Sbjct: 987 GWRGLYGGLGTHVIRQVPNTAIMFFTYEGV 1016
>SB_14513| Best HMM Match : rve (HMM E-Value=0.14)
Length = 1101
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 144 GLWHRGWRRPGHPQPDLDGVIDE 76
G W R R P HP+PDL+ +DE
Sbjct: 563 GRWRRESRAPNHPRPDLN-TLDE 584
>SB_53298| Best HMM Match : Keratin_B2 (HMM E-Value=3.9)
Length = 269
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDEPLQRG--EGTDHHDPG 34
W R R P HP+PDL+ + + L+ GTD + G
Sbjct: 58 WRRESRAPNHPRPDLNTLGESKLEGAWQSGTDLTERG 94
>SB_56578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDEPLQRG--EGTDHHDPG 34
W R R P HP+PDL+ + + L+ GTD + G
Sbjct: 665 WRRESRAPNHPRPDLNTLGESKLEGAWQSGTDLTERG 701
>SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1)
Length = 740
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDEPLQRG---EGTD 49
W R R P HP+PDL+ +DE G GTD
Sbjct: 448 WWRESRAPSHPRPDLN-TLDESKPEGAWQSGTD 479
>SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24)
Length = 1497
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDEPLQRG 61
W R R P HP+PDL+ +DE G
Sbjct: 1245 WRRESRAPNHPRPDLN-TLDESKPEG 1269
>SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)
Length = 1081
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDEPLQRG--EGTD 49
W R R P HP+PDL+ + + L+ GTD
Sbjct: 659 WRRESRAPNHPRPDLNTLGESKLEGAWQSGTD 690
>SB_47038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 876
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDEPLQRG---EGTD 49
W R R P HP+PDL+ +DE G GTD
Sbjct: 295 WWRESRAPSHPRPDLN-TLDESKPEGAWQSGTD 326
>SB_36025| Best HMM Match : LHC (HMM E-Value=2.9)
Length = 671
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDEPLQRG---EGTD 49
W R R P HP+PDL+ +DE G GTD
Sbjct: 367 WWRESRAPSHPRPDLN-TLDESKPEGAWQSGTD 398
>SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDEPLQRG---EGTD 49
W R R P HP+PDL+ +DE G GTD
Sbjct: 583 WWRESRAPSHPRPDLN-TLDESKPEGAWQSGTD 614
>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 612
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 4 GWAGVWKGLGPRIVMIGTLTALQWFIYDAV 93
G G+++GL PR V ++A+ W IY+ V
Sbjct: 573 GIEGLFRGLVPRTVRRTLMSAMAWTIYEEV 602
>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
Length = 1225
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDEPLQRG 61
W R R P HP+PDL+ +DE G
Sbjct: 708 WRRESRAPNHPRPDLN-TLDESKPEG 732
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 4 GWAGVWKGLGPRIVMIGTLTALQWFIYDAVKV 99
G G++KGL P +V I +Q +YD +K+
Sbjct: 84 GIRGLYKGLVPSLVSIAPFLGVQQSVYDIMKL 115
>SB_5338| Best HMM Match : rve (HMM E-Value=0.0034)
Length = 537
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDEPLQRG---EGTD 49
W R R P HP+PDL+ +DE G GTD
Sbjct: 108 WWRESRAPSHPRPDLN-TLDESKLEGAWQSGTD 139
>SB_1433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1096
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDEPLQ 67
W R R P HP+PDL+ + + L+
Sbjct: 814 WRRESRAPNHPRPDLNTLDESKLE 837
>SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)
Length = 1736
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDEPLQRG--EGTD 49
W R R P HP+PDL+ + + L+ GTD
Sbjct: 1524 WPRESRAPNHPRPDLNTLGESKLEGAWQSGTD 1555
>SB_44641| Best HMM Match : rve (HMM E-Value=1.9e-19)
Length = 840
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDEPLQRG 61
W R R P HP+PDL+ +DE G
Sbjct: 380 WWRESRAPNHPRPDLN-TLDESKPEG 404
>SB_38547| Best HMM Match : COX5B (HMM E-Value=2.5)
Length = 405
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 134 CQSPCGFGSKPKRPRTNEKP 193
C CGFG K + PR E P
Sbjct: 119 CYKTCGFGCKSRAPRLCESP 138
>SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9)
Length = 842
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDE 76
W R R P HP+PDL+ +DE
Sbjct: 685 WRRESRAPNHPRPDLN-TLDE 704
>SB_16283| Best HMM Match : Pox_A32 (HMM E-Value=0.012)
Length = 410
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDE 76
W R R P HP+PDL+ +DE
Sbjct: 386 WRRESRAPNHPRPDLN-TLDE 405
>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4002
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/21 (42%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Frame = -2
Query: 370 IFGNCTTINAKR-RSVKHFAL 311
++ +CTT+N+KR R +KH+ +
Sbjct: 3082 LYSSCTTVNSKRGRFIKHYTI 3102
>SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47)
Length = 1345
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 156 PKPHGLWHRGWRRPGHPQPDLDGVIDEP 73
P+ HG R G P+PD DG++ P
Sbjct: 662 PREHGTEPRHGSTTGLPRPDCDGLLSAP 689
>SB_10797| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 754
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 138 WHRGWRRPGHPQPDLDGVIDEPLQRG--EGTD 49
W R R P HP+PDL+ + + L+ GTD
Sbjct: 516 WWRESRAPNHPRPDLNTLGESKLEGAWQSGTD 547
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,832,511
Number of Sequences: 59808
Number of extensions: 281582
Number of successful extensions: 739
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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