Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0326
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   9.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   9.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   9.7  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 159 EPKPHGLWHRGWR 121
           EP P   W++GW+
Sbjct: 203 EPSPKTPWYKGWK 215


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 39 PGPQTLPHSGP 7
          PGPQ  PH  P
Sbjct: 21 PGPQPSPHQSP 31


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 3   RLGRSVEGSGAQDRDD 50
           R  R  +G GA DRDD
Sbjct: 267 RKRRQNDGEGADDRDD 282


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/47 (23%), Positives = 19/47 (40%)
 Frame = +2

Query: 209 NYTQRWTNTDLETFPANYLLFNFNTTRELLSESM*REMFDTSSFRIN 349
           N  Q+  N D      N+ + N N    +L+        D + F+I+
Sbjct: 383 NKMQKMVNNDFNFDDVNFRIMNANVNELILNTRCENPDNDRTPFKIS 429


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/47 (23%), Positives = 19/47 (40%)
 Frame = +2

Query: 209 NYTQRWTNTDLETFPANYLLFNFNTTRELLSESM*REMFDTSSFRIN 349
           N  Q+  N D      N+ + N N    +L+        D + F+I+
Sbjct: 383 NKMQKMVNNDFNFDDVNFRIMNANVNELILNTRCENPDNDRTPFKIS 429


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/47 (23%), Positives = 19/47 (40%)
 Frame = +2

Query: 209 NYTQRWTNTDLETFPANYLLFNFNTTRELLSESM*REMFDTSSFRIN 349
           N  Q+  N D      N+ + N N    +L+        D + F+I+
Sbjct: 383 NKMQKMVNNDFNFDDVNFRIMNANVNELILNTRCENPDNDRTPFKIS 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,953
Number of Sequences: 438
Number of extensions: 3017
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)