Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0325
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1566 + 27909297-27909390,27909542-27909645,27912899-279130...    32   0.33 
09_06_0327 + 22359524-22359602,22359732-22359835,22362073-223622...    32   0.44 
08_02_0085 + 12108474-12108552,12108656-12108759,12109726-121099...    29   4.1  
07_03_0423 + 18035688-18036572,18036659-18036978,18052618-180527...    28   7.2  
01_05_0138 + 18516689-18518161                                         27   9.5  

>08_02_1566 +
           27909297-27909390,27909542-27909645,27912899-27913098,
           27913214-27913314,27913427-27914130,27914671-27914834,
           27914941-27915100
          Length = 508

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 19  LRCERARV-LSAALSDSDRAVFRCDPSTIDWDQYL-PIYFEGINKHLFK 159
           +  ER R  +  + +  D  +F  DP TIDW+ Y   I+  G+ K++ K
Sbjct: 460 INLERLRQRMGKSRNPQDDEMFNFDPKTIDWEDYFYRIHIPGVLKYILK 508


>09_06_0327 +
           22359524-22359602,22359732-22359835,22362073-22362272,
           22362359-22362459,22362551-22363005,22363079-22363645
          Length = 501

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 19  LRCERARV-LSAALSDSDRAVFRCDPSTIDWDQYL-PIYFEGINKHL 153
           L  E+ R+ ++   S +  A+F  DP  IDWD Y   I+  G+ K++
Sbjct: 452 LNMEKLRLSMATPPSSAAAALFNLDPKNIDWDDYFYRIHIPGVMKYV 498


>08_02_0085 +
           12108474-12108552,12108656-12108759,12109726-12109925,
           12110003-12110103,12110184-12110379,12110584-12110745,
           12110856-12110937,12111741-12112004,12113047-12113174,
           12113795-12113957
          Length = 492

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 79  FRCDPSTIDWDQYL-PIYFEGINKHL 153
           F  DP +IDWD+Y   ++  G+ K+L
Sbjct: 465 FDFDPKSIDWDEYFYKVHIPGVVKYL 490


>07_03_0423 +
           18035688-18036572,18036659-18036978,18052618-18052724,
           18053001-18053104,18054129-18054328,18054422-18054522,
           18054695-18054841,18055007-18055166,18055287-18055368,
           18056070-18056336,18056846-18056973,18057513-18057672
          Length = 886

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 34  ARVLSAALSDSDR--AVFRCDPSTIDWDQYL-PIYFEGINKHLFK 159
           AR+ +A   D  +   V   DP +IDW+ YL   +  G+ K+  K
Sbjct: 841 ARLQTATTQDQSKEACVLNFDPKSIDWEYYLYNSHIPGVMKYAHK 885


>01_05_0138 + 18516689-18518161
          Length = 490

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 62  IQTALSSAAILPP*TGTNICQYTSKESTSICSKINYSRFLIG 187
           + TAL  + ++PP +G++    +S  S +  +K    R ++G
Sbjct: 428 VSTALEGSGLMPPPSGSDTASTSSSASAAATNKRKNERSILG 469


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,402,288
Number of Sequences: 37544
Number of extensions: 326037
Number of successful extensions: 719
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)