Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0325
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical ...    33   0.23 
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    29   2.1  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    29   2.1  
Z81045-4|CAB54202.2|  402|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81045-3|CAB02817.3|  280|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical pr...    29   3.7  

>AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical
           protein Y71H10A.2 protein.
          Length = 536

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +1

Query: 1   TSQSWLLRCERARVLSAALSDSDRAVFRCDPSTIDWDQYLPIYFEGINKHLFKNKL 168
           T++ W             ++ +D+  +  D   +DW+ YL  Y  GI K L K  L
Sbjct: 396 TTRGWSFNARGLPEFFEKMTPADQKEYNFDVRQVDWNSYLFDYVMGIKKFLLKENL 451


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -3

Query: 528 NAMLLQGRNRRSGGTYPCG 472
           +A L+ GRN+RSGGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -3

Query: 528 NAMLLQGRNRRSGGTYPCG 472
           +A L+ GRN+RSGGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>Z81045-4|CAB54202.2|  402|Caenorhabditis elegans Hypothetical
           protein C36F7.4b protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 22/93 (23%), Positives = 36/93 (38%)
 Frame = -3

Query: 555 PRLPHLSNRNAMLLQGRNRRSGGTYPCGLTRGPTTSNYANYNFAGLIFITRCCSFTAEVN 376
           PR+  L N   + ++       G Y C +   P T +    +    +F       T +V+
Sbjct: 145 PRIGDLHNEWVLTIKNVQESDRGNYSCQINTEPITLSTGELDVKASVFHGPVLHLT-KVS 203

Query: 375 REHLLSTYFIRKIGIRLRDSNTGASLYTNAPYV 277
           R+H+     +   GI   +S T   L T  P V
Sbjct: 204 RKHMSEYLCVASNGIPPDESWTVKLLVTFPPLV 236


>Z81045-3|CAB02817.3|  280|Caenorhabditis elegans Hypothetical
           protein C36F7.4a protein.
          Length = 280

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 22/93 (23%), Positives = 36/93 (38%)
 Frame = -3

Query: 555 PRLPHLSNRNAMLLQGRNRRSGGTYPCGLTRGPTTSNYANYNFAGLIFITRCCSFTAEVN 376
           PR+  L N   + ++       G Y C +   P T +    +    +F       T +V+
Sbjct: 55  PRIGDLHNEWVLTIKNVQESDRGNYSCQINTEPITLSTGELDVKASVFHGPVLHLT-KVS 113

Query: 375 REHLLSTYFIRKIGIRLRDSNTGASLYTNAPYV 277
           R+H+     +   GI   +S T   L T  P V
Sbjct: 114 RKHMSEYLCVASNGIPPDESWTVKLLVTFPPLV 146


>Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical
           protein R10E4.4 protein.
          Length = 759

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -1

Query: 416 FLLHDVVPSPRKSIVNIC*VRISLEKL---VSACGIRTPVHRYIRMHRTSYPIGHDDFT 249
           +L   VVP  R +IV +  ++  ++K     S  GIRTP  R + +H  +   G  +FT
Sbjct: 253 YLTDKVVPGNRVTIVGVYSIKKLIQKKGGDKSLQGIRTPYLRVLGIHMETSGPGRTNFT 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,322,489
Number of Sequences: 27780
Number of extensions: 294588
Number of successful extensions: 602
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)