Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0325
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   7.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 537 SNRNAMLLQGRNRRSGGTYPCGLT 466
           +  NAMLL GR+++S    P G T
Sbjct: 366 TKENAMLLSGRSQKSTTGPPPGPT 389


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 176 IDYNLFLNRCLLIPSKYIGKYWSQSMVEGSQRK 78
           + +NL L++C +      G  W+   VE  +R+
Sbjct: 552 VRHNLSLHKCFMRVENVKGAVWTVDEVEFYKRR 584


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -1

Query: 350 SLEKLVSACGIRTPVHRYIRMHRTSYPIG 264
           SLE  +SA  +      Y + H +  P G
Sbjct: 38  SLESSLSAAAVAAAAVNYAQQHNSPSPTG 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,300
Number of Sequences: 438
Number of extensions: 4550
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)