Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0325
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63580.1 68414.m07187 protein kinase-related                        30   1.5  
At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL...    29   2.6  
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea...    29   3.4  
At5g22500.1 68418.m02626 acyl CoA reductase, putative / male-ste...    28   4.5  
At5g66850.1 68418.m08428 protein kinase family protein contains ...    27   7.9  
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    27   7.9  

>At1g63580.1 68414.m07187 protein kinase-related
          Length = 273

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
 Frame = -3

Query: 537 SNRNAMLLQGRNRRSGGTYPCGLTRGPTTSN-YANYNFAGLIFITRC--C--SFTAEVNR 373
           SNRN +L   RN  S G+Y    T G + +  Y  +   G I  T C  C  S T E+++
Sbjct: 39  SNRNTVLSTLRNHSSLGSYYFNATAGLSPNTVYGMFLCIGNISKTSCSNCVHSATLEMDK 98

Query: 372 ---EHLLSTYFIRKIGIRLRDSNTGASLYTNAPYVLSY 268
               H  S  F  +  +R  D N+  SL  ++P   SY
Sbjct: 99  SCESHDTSFMFSDECMVRYSD-NSFFSLVEDSPATFSY 135


>At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1
            (PLDBETA1) identical to SP|P93733 Phospholipase D beta 1
            (EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta)
            {Arabidopsis thaliana}; contains Pfam profiles: PF00614
            phospholipase D.active site motif, PF00168 C2 domain
          Length = 1083

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -3

Query: 321  DSNTGASLYTNAPYVLSYRSRRLYIYF----IVVD*SYCYLSIFGINYK 187
            +S TG+    N P  LS +SRR  +Y     +VVD  Y  +    IN +
Sbjct: 907  NSGTGSPSNANTPQALSRKSRRFMVYVHSKGMVVDDEYVVIGSANINQR 955


>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
           sapiens]
          Length = 726

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 537 SNRNAMLLQGRNRRSGGTYPCGLTRGPTTSNYANYNFAGLIFITR 403
           SN+ ++  +  NR S    P   + GP+  N    N    IF+TR
Sbjct: 288 SNQTSLAAENENRTSSPPLPLATSSGPSGPNSVPGNSPSNIFLTR 332


>At5g22500.1 68418.m02626 acyl CoA reductase, putative /
           male-sterility protein, putative similar to acyl CoA
           reductase [Simmondsia chinensis] GI:5020215; contains
           Pfam profile PF03015: Male sterility protein; identical
           to cDNA male sterility 2-like protein GI:1491614
          Length = 491

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 79  FRCDPSTIDWDQYLP-IYFEGINKHLFK 159
           F  DP +IDWD Y+   +  G+  H+ K
Sbjct: 463 FEFDPKSIDWDNYITNTHIPGLITHVLK 490


>At5g66850.1 68418.m08428 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain; identical
           to cDNA MAP3K gamma protein kinase GI:2315152
          Length = 716

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 552 RLPHLSNRNAMLLQGRNRRSGGTYPCGLTRGPT 454
           +L HL++ + +L + R   S  T+  GLTR P+
Sbjct: 58  KLRHLTDDDVLLGERRASTSSSTFDSGLTRSPS 90


>At1g79280.1 68414.m09242 expressed protein weak similarity to
           Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 31  RARVLSAALSDSDRAVFRCDPSTIDWD 111
           RA V  A LSD ++ +   DP T+D D
Sbjct: 903 RASVAEARLSDLEKKIRSSDPKTLDMD 929


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,272,652
Number of Sequences: 28952
Number of extensions: 266714
Number of successful extensions: 531
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)