Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0324
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 31 0.097
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 29 0.52
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 28 1.2
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 27 2.8
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 3.7
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy... 26 3.7
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 3.7
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 26 4.8
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 4.8
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 26 4.8
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.8
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 26 4.8
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 25 6.4
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 6.4
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 25 6.4
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 6.4
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 6.4
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 8.5
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 8.5
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 8.5
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe... 25 8.5
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 25 8.5
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 25 8.5
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 31.5 bits (68), Expect = 0.097
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +3
Query: 411 H*PPHAALSIRDDFSGALLCSAPHSRGVSTCEVPQEEQKIKRSKLVLPKS 560
H P H LSI LC PH G TC + + ++ I R K L KS
Sbjct: 1318 HLPAHCPLSIVP-LEICFLCGTPHFSGRDTCPMLRNKEAIYRLKDSLSKS 1366
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 29.1 bits (62), Expect = 0.52
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 214 DETGELVTYGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQTKK 369
DE + VT + E+ + + P F TPR PP + P P P + KK
Sbjct: 125 DEDDKHVTVEIVEDDDDEEIAYPKEGFV-TPRISPPPDVPLRPHKPKNAAKK 175
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 27.9 bits (59), Expect = 1.2
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = -2
Query: 345 FWKIRSLHRWNGPRCSKKGHRWIINHRLASFFVHTVSDQLARLVVEEEATSSGHPYLQRS 166
FWK+ L RW C + HR F VS+ LA+ V E S P +S
Sbjct: 606 FWKLDILDRWGIKHCLSNVSLQLHLHR----FHELVSENLAKAV--EYLQKSMQPQFDKS 659
Query: 165 PV 160
P+
Sbjct: 660 PL 661
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +3
Query: 348 SNESDKEVSSTQGKHNRRLQSH*PP--HAALSIRDDFSGALLCSAPHSRGVSTCEVPQE 518
+++ D + +H R+ + PP +RD + L A ++ GVST V QE
Sbjct: 497 TDDIDDKKDRALSEHVLRMHRYLPPGVEPGTPVRDSLNSVLNVGATNAAGVSTENVEQE 555
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 26.2 bits (55), Expect = 3.7
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +3
Query: 345 RSNESDKEVSSTQGKHNRRLQSH*PPHAALSIRDDFSGALLCSAPHSRGVSTCEVPQEEQ 524
+ SD + S RL S + L +DD S S S S E +EE
Sbjct: 6 KGGSSDSDAESVDSSEENRLTS-----SRLKKQDDSSSEEESSEEESASSSESESSEEES 60
Query: 525 KIKRSKLVLPK 557
+ + S++ +PK
Sbjct: 61 ESEESEVEVPK 71
>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 345 FWKIRSLH-RWNGPRCSKKGHRWII 274
+W R LH R+ PR K H+WII
Sbjct: 134 YWAHRFLHHRYVYPRLHKLHHKWII 158
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 277 NPTVSFFGTPRPIPPMETPNFPEGPMSQTKKFQALKENIIAGSNP 411
N + F GTPRP+ P+ P + + K + E+I+ NP
Sbjct: 92 NKSFDFSGTPRPMHPISHP-LSQHKTPEFKHRKRNVESILTPKNP 135
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 322 METPNFPEGPMSQTKKFQALKEN 390
M PN P+ P Q +KF+A+ N
Sbjct: 4 MTVPNTPQKPNLQQQKFEAINAN 26
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 241 GVNEETGEPMVN-NPTVSFFGTPRPIPPMETPNFPE 345
G+ ++ G + N N FG P+ P+E P+ PE
Sbjct: 85 GIRDKGGVEISNKNDPYIQFGKADPLEPLEKPDLPE 120
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +1
Query: 247 NEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQTKKFQALKENIIAGSNPISHRM 426
++E GE ++P + +PPM+ P FPE + Q F A P
Sbjct: 30 DKEDGEISEDDPVID---QSNSVPPMKVPTFPE-QIPQLPPFDRF-PGTNANFFPFGAPF 84
Query: 427 LLFPSVMIFP 456
+L P++M P
Sbjct: 85 MLPPALMFGP 94
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +3
Query: 282 NGVLFWN-----TSAHSTDGDSEFSRRSNESDKEVSSTQGKHNRRLQSH 413
NG+L +N T TD D F+R N S + + + H+ + SH
Sbjct: 307 NGLLHYNMETAETDESYTDLDDTFARLKNLSQRHTNHSTDHHDDTVDSH 355
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -2
Query: 393 YVFLE-CLKLLCLTHWTFWKIRSLH-RWNGPRCSKKGHRWIINHRLASFFVH 244
Y+F L LL +W R+LH RW K H+WI+ +S H
Sbjct: 150 YLFFSIALFLLFSDFLIYWIHRALHHRWLYAPLHKLHHKWIVPTPYSSHAFH 201
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 369 LLCLTHWTFWKIRSLHRWNGPR 304
L CL +T K + HRWN R
Sbjct: 530 LSCLPRYTSGKTQFYHRWNASR 551
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +3
Query: 426 AALSIRDD-FSGALLCSAPHSRGVSTCEVPQE 518
A+L RDD G LC+ H V C VP E
Sbjct: 203 ASLYSRDDEIDGISLCNLVHKFFVDACTVPGE 234
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 396 RRLQSH*PPHAALSIRDDFSGALLCSAPHSRGV 494
R L S PPH +++ D ALL +AP R V
Sbjct: 539 RVLSSGCPPHGGIALGFDRLAALLTNAPGIREV 571
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 282 WIINHRLASFFVHTVSDQLARLVVE 208
W+I +LA F++H + +A + E
Sbjct: 157 WLIERKLAEFYMHLLKHMVAVCIAE 181
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +1
Query: 262 EPMVNNPTVSFFGTPRPI-PPMETP 333
EP+++ PT+ + TP P+ PP E+P
Sbjct: 584 EPLLS-PTIDYSATPFPLEPPPESP 607
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -2
Query: 318 WNGPRCSKKGHRWIINHRLASFFVHTVSD 232
WN P+ + +N+ L VHT SD
Sbjct: 1167 WNTPKLKIPSQQVTVNNTLQQIHVHTSSD 1195
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 100 QNNEIEHRNSTDNFLKQLSVCIEYSHTQNT 11
Q NE +H+ S+ L + I+ +HT NT
Sbjct: 543 QQNENQHKRSSRKLLYEDKQAIQEAHTINT 572
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 74 VSVFNFIVLFQLLVSVRLRRN 136
+SVF +++LF ++ + LR N
Sbjct: 347 ISVFRYLILFSSIIPINLRVN 367
>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/58 (24%), Positives = 23/58 (39%)
Frame = +1
Query: 184 MATARGFFFDDETGELVTYGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMS 357
++TA G + G+ E EP N+P + + P+ + F GP S
Sbjct: 54 ISTANGSAIIRAGENVFVCGIKAEIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPS 111
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 556 FGSTSFDLLIFCSSCGTS 503
+ S+SF IFC +CGT+
Sbjct: 60 YASSSFAERIFCKNCGTT 77
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 470 TQKSSGKIITDGKSSMRWLMGLEPAIMF 387
T K+SG+++TDG + W + +F
Sbjct: 516 TAKTSGRVVTDGGINRGWWAAFTSSSLF 543
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,464
Number of Sequences: 5004
Number of extensions: 49811
Number of successful extensions: 167
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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