Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0324
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153...    33   0.17 
04_04_0592 + 26477974-26479311                                         29   3.8  
06_03_0555 + 22080522-22080845,22081190-22081290,22081916-22082027     28   5.0  
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    28   6.6  
11_02_0086 + 8186355-8186667,8186773-8187335                           27   8.7  
11_01_0174 + 1394229-1394346,1394695-1394891,1394972-1395052,139...    27   8.7  

>03_01_0192 -
           1534013-1535147,1535249-1535370,1535497-1535556,
           1535666-1535764,1535839-1535889,1535974-1536175,
           1536709-1536911,1537264-1537350,1537435-1537589,
           1537640-1537723,1538121-1538325,1538497-1538724
          Length = 876

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 21/83 (25%), Positives = 39/83 (46%)
 Frame = +3

Query: 279 SNGVLFWNTSAHSTDGDSEFSRRSNESDKEVSSTQGKHNRRLQSH*PPHAALSIRDDFSG 458
           ++G    NT A S    S+ S+ + + D + +  +G + + ++ + P  A    R D  G
Sbjct: 572 ASGASTENTQA-SEQSSSDDSKETEQQD-DFTRVEGANTQEVECNSPEMATERFRSDSHG 629

Query: 459 ALLCSAPHSRGVSTCEVPQEEQK 527
            L  +AP      T +VP+ E +
Sbjct: 630 DLAATAPELEPTDTEQVPETESQ 652


>04_04_0592 + 26477974-26479311
          Length = 445

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 280 PTVSFFGTPRPIPPMETPNFPEGPMSQTKKFQA 378
           PT +   TP P PP+  P  P  P    KK  A
Sbjct: 89  PTPTTTTTPTPTPPLPPPAPPASPAKSNKKASA 121


>06_03_0555 + 22080522-22080845,22081190-22081290,22081916-22082027
          Length = 178

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 429 ALSIRDDFSGALLCSAPHSRGVSTCEVPQEEQKIKRSKLVLPKS 560
           A+S R   SG+  CSAPH+RG           ++ R ++  P S
Sbjct: 30  AMSGRRGVSGSGRCSAPHARGSGYSGAYPARLRVARPRIQRPTS 73


>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +1

Query: 295 FGTPRPIPPMETPNFPEGPMSQTKKFQA 378
           FG P   PPM  P F  GP  QT  F A
Sbjct: 422 FGVPPGPPPMLPPPFYPGPPIQTGDFAA 449


>11_02_0086 + 8186355-8186667,8186773-8187335
          Length = 291

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 265 PMVNNPTVSFFGTP-RPIPPMETPNFPEGPMS 357
           P+V +P  S   +P RP PP+ +P  PE P++
Sbjct: 221 PVVASPRDSSIASPPRPEPPVASPPGPEPPVA 252


>11_01_0174 +
           1394229-1394346,1394695-1394891,1394972-1395052,
           1395184-1395393,1395531-1395608,1395682-1395990
          Length = 330

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 346 GPMSQTKKFQALKENIIAGSNPISHRML 429
           GP+S+ + F AL   I  G NP +HR L
Sbjct: 19  GPLSE-RDFHALFSAISGGKNPATHRQL 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,707,387
Number of Sequences: 37544
Number of extensions: 333812
Number of successful extensions: 1155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)