Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0324
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23354| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.94 
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_20102| Best HMM Match : FYVE (HMM E-Value=3.8e-08)                  29   3.8  
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)                   28   5.0  
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)                    28   5.0  
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              27   8.8  

>SB_23354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 492 VSTCEVPQEEQKIKRSKLVLPKSVSCRNKYFLWS 593
           +++ E   E Q IKRS  VL  S SCR +Y  W+
Sbjct: 6   IASFENATEHQGIKRSVAVLECSCSCRIRYLPWN 39


>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2162

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -2

Query: 378  CLKLLCLTHWTFWKIRSLHRWNGPRCS 298
            C    C+  W  ++     RW GP CS
Sbjct: 1125 CTNGTCIDEWLTYRCACYRRWTGPNCS 1151


>SB_20102| Best HMM Match : FYVE (HMM E-Value=3.8e-08)
          Length = 910

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 285 GVLFWNTSAHSTDGDSE-FSRRSNESDKEVSSTQGKHNRRLQS 410
           G + ++ + H +D +SE F++     D  +SS  G+  R LQS
Sbjct: 221 GEISFSNTTHDSDTNSENFNQNEPFKDANISSATGEQERSLQS 263


>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1130

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -1

Query: 562 TDFGSTSFDLLIFCSSCG--TSHVDT--PLE*GAEHRRAPEKSSRMER 431
           TD      +L+  CSS G  TSH D   P+E    H+RA + S+R +R
Sbjct: 379 TDRDVLKVNLMYKCSSVGPPTSHSDQDEPIEVRHRHKRALQDSARAKR 426


>SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/86 (24%), Positives = 35/86 (40%)
 Frame = +3

Query: 300 NTSAHSTDGDSEFSRRSNESDKEVSSTQGKHNRRLQSH*PPHAALSIRDDFSGALLCSAP 479
           + SA S    S+ +  +N S  + SS     N    +      A S     + A L SAP
Sbjct: 108 SASASSNIASSDIASSANASSAKTSSASASSNIASSASASSDVASSAIASSASASLTSAP 167

Query: 480 HSRGVSTCEVPQEEQKIKRSKLVLPK 557
            +   S+   P  + +++    VLP+
Sbjct: 168 FAIASSSGPTPDVDMELENDLDVLPE 193


>SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)
          Length = 599

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/86 (24%), Positives = 35/86 (40%)
 Frame = +3

Query: 300 NTSAHSTDGDSEFSRRSNESDKEVSSTQGKHNRRLQSH*PPHAALSIRDDFSGALLCSAP 479
           + SA S    S+ +  +N S  + SS     N    +      A S     + A L SAP
Sbjct: 364 SASASSNIASSDIASSANASSAKTSSASASSNIASSASASSDVASSAIASSASASLTSAP 423

Query: 480 HSRGVSTCEVPQEEQKIKRSKLVLPK 557
            +   S+   P  + +++    VLP+
Sbjct: 424 FAIASSSGPTPDVDMELENDLDVLPE 449


>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
          Length = 1348

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 271 VNNPTVSFFGTPRPIPPMETPNFPEGPMSQTKKFQA 378
           V   T  +   PRP PPM TP +   P  +++  +A
Sbjct: 187 VGGGTYDYVPPPRPTPPMNTPTYEIPPPFKSRPEEA 222


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 238  YGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQT 363
            +G   +TG P    P    F  P P  P    N+P  PM QT
Sbjct: 1259 HGYGPDTG-PYAPGP---MFNGPAPYRPYAPENYPRAPMMQT 1296


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,354,867
Number of Sequences: 59808
Number of extensions: 384486
Number of successful extensions: 1461
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)