Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0324
(601 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical pr... 30 1.1
U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical pr... 29 2.5
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 4.4
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 4.4
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 4.4
AL032639-11|CAA21637.2| 426|Caenorhabditis elegans Hypothetical... 28 4.4
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z82283-1|CAB05282.1| 354|Caenorhabditis elegans Hypothetical pr... 27 7.7
AY046083-1|AAL02420.1| 354|Caenorhabditis elegans zinc finger p... 27 7.7
>Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical
protein F55C5.4 protein.
Length = 1010
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = +1
Query: 364 KKFQALKENIIAGSNPISHRMLLF-PSVMIFPE 459
+K A++E+IIA +NP + R + F P+++I PE
Sbjct: 38 RKLWAVQEDIIANANPSTLRCIFFAPALLICPE 70
>U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical
protein R07E4.5 protein.
Length = 817
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +3
Query: 300 NTSAHSTDGDSEFSRRSNESDKEVSSTQGKHNRRLQSH*PPHAALSIRDDFSGALLCSAP 479
N + + DG+S N +++ + T+G RRLQ+ P +A +D +G LL
Sbjct: 313 NENGYEGDGESGPITAENVKNEKTNLTKGGRKRRLQTLEPSNAKKG-KDAKNGDLLSEVK 371
Query: 480 HSRGVSTCE 506
+ + T E
Sbjct: 372 NDKEAETKE 380
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/82 (23%), Positives = 33/82 (40%)
Frame = +1
Query: 181 RMATARGFFFDDETGELVTYGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQ 360
R + F D +V +N++ P N T+ R PP+E P+G S
Sbjct: 1594 RKVDIKDFVSTDTAYAVVVQAINDDGPGPYSNQYTIRTMSRAREGPPVELRVEPDGQRSA 1653
Query: 361 TKKFQALKENIIAGSNPISHRM 426
++ KE + + PI + +
Sbjct: 1654 VAQW---KEPVTSDVPPIGYEI 1672
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/82 (23%), Positives = 33/82 (40%)
Frame = +1
Query: 181 RMATARGFFFDDETGELVTYGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQ 360
R + F D +V +N++ P N T+ R PP+E P+G S
Sbjct: 1657 RKVDIKDFVSTDTAYAVVVQAINDDGPGPYSNQYTIRTMSRAREGPPVELRVEPDGQRSA 1716
Query: 361 TKKFQALKENIIAGSNPISHRM 426
++ KE + + PI + +
Sbjct: 1717 VAQW---KEPVTSDVPPIGYEI 1735
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/82 (23%), Positives = 33/82 (40%)
Frame = +1
Query: 181 RMATARGFFFDDETGELVTYGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQ 360
R + F D +V +N++ P N T+ R PP+E P+G S
Sbjct: 1657 RKVDIKDFVSTDTAYAVVVQAINDDGPGPYSNQYTIRTMSRAREGPPVELRVEPDGQRSA 1716
Query: 361 TKKFQALKENIIAGSNPISHRM 426
++ KE + + PI + +
Sbjct: 1717 VAQW---KEPVTSDVPPIGYEI 1735
>AL032639-11|CAA21637.2| 426|Caenorhabditis elegans Hypothetical
protein Y38F1A.10b protein.
Length = 426
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 306 SAHSTDGDSEFSRRSNESDKEVSSTQGKHNRRLQSH*PP 422
S S+DGD + S + N +DK V G + PP
Sbjct: 79 STTSSDGDVQLSNKENSNDKSVGDKNGNTTTNKTTVEPP 117
>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical protein
F41H10.3a protein.
Length = 1140
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +1
Query: 250 EETGEPMVNNPTVSF---FGTPRPIPPMETPNFPEGPMSQTKKFQALKENIIAGS 405
EET E M ++P +S T P PP P + T AL + I AGS
Sbjct: 1019 EETAEKMSSSPLLSSQAPMTTLMPTPPPPAPAPAQASAQSTSATPALVDTISAGS 1073
>Z82283-1|CAB05282.1| 354|Caenorhabditis elegans Hypothetical
protein T23G4.1 protein.
Length = 354
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 265 PMVNNPTVSFFGTPRPIPPMETPNFPEG 348
P PT++F G P+P PM P +G
Sbjct: 85 PQSKEPTLTFPGLPKPSFPMGMPGMMQG 112
>AY046083-1|AAL02420.1| 354|Caenorhabditis elegans zinc finger
protein TLP-1 protein.
Length = 354
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 265 PMVNNPTVSFFGTPRPIPPMETPNFPEG 348
P PT++F G P+P PM P +G
Sbjct: 85 PQSKEPTLTFPGLPKPSFPMGMPGMMQG 112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,739,028
Number of Sequences: 27780
Number of extensions: 296724
Number of successful extensions: 1018
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -