Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0324
(601 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein RJP... 23 1.7
DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein pr... 23 1.7
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 23 3.0
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 22 5.3
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 5.3
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 5.3
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 21 7.0
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 21 7.0
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 21 9.2
AF393496-1|AAL60421.1| 146|Apis mellifera odorant binding prote... 21 9.2
AF339140-1|AAK01304.1| 120|Apis mellifera odorant binding prote... 21 9.2
>Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein
RJP57-2 protein.
Length = 464
Score = 23.4 bits (48), Expect = 1.7
Identities = 8/32 (25%), Positives = 17/32 (53%)
Frame = +3
Query: 300 NTSAHSTDGDSEFSRRSNESDKEVSSTQGKHN 395
N + HS+ D++ + + N+ S + +HN
Sbjct: 430 NQARHSSKSDNQNNNQHNDQAHHSSKSNNRHN 461
>DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein
protein.
Length = 484
Score = 23.4 bits (48), Expect = 1.7
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = -2
Query: 384 LECLKLLCLTHWTF 343
++CL ++CL W+F
Sbjct: 385 IQCLTVVCLAFWSF 398
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 22.6 bits (46), Expect = 3.0
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 284 RCPFLEHLG 310
+CPF EHLG
Sbjct: 197 KCPFTEHLG 205
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.8 bits (44), Expect = 5.3
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1
Query: 106 VISECTSAQKYQKLHSFLDWTALQIRMATARGFFFDDETGELVTYGVNEET 258
VI C+S + Y L L A I + A FF DD + + + +T
Sbjct: 80 VIHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDT 130
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.8 bits (44), Expect = 5.3
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1
Query: 106 VISECTSAQKYQKLHSFLDWTALQIRMATARGFFFDDETGELVTYGVNEET 258
VI C+S + Y L L A I + A FF DD + + + +T
Sbjct: 80 VIHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDT 130
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.8 bits (44), Expect = 5.3
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1
Query: 106 VISECTSAQKYQKLHSFLDWTALQIRMATARGFFFDDETGELVTYGVNEET 258
VI C+S + Y L L A I + A FF DD + + + +T
Sbjct: 80 VIHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDT 130
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 21.4 bits (43), Expect = 7.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 190 WPSLFATQSSLKSYAAFGISAQTY 119
W SLFA +++ + +GIS Y
Sbjct: 315 WGSLFAKANAVYNPIVYGISHPKY 338
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 21.4 bits (43), Expect = 7.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3
Query: 177 NKDGHCSWLLLRRRDGRV 230
N GH WL L +D +V
Sbjct: 506 NLKGHAHWLTLHFKDPKV 523
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.0 bits (42), Expect = 9.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 11 SVLCMRILNTDRKLF*KIVRRVSVFNFIVLFQLLVS 118
S LC+ + + K+ +S+ +V+F LLVS
Sbjct: 248 SFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVS 283
>AF393496-1|AAL60421.1| 146|Apis mellifera odorant binding protein
ASP6 protein.
Length = 146
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = +3
Query: 504 EVPQEEQKIKRSKLVLPKSVSCRNKYFLW 590
E PQ+E+ + K ++ + + +N LW
Sbjct: 61 EFPQDERLMCYMKCIMIATKAMKNDVILW 89
>AF339140-1|AAK01304.1| 120|Apis mellifera odorant binding protein
protein.
Length = 120
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = +3
Query: 504 EVPQEEQKIKRSKLVLPKSVSCRNKYFLW 590
E PQ+E+ + K ++ + + +N LW
Sbjct: 35 EFPQDERLMCYMKCIMIATKAMKNDVILW 63
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,784
Number of Sequences: 438
Number of extensions: 3428
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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