Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0324
(601 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 29 2.4
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 29 2.4
At3g48050.2 68416.m05239 bromo-adjacent homology (BAH) domain-co... 29 2.4
At3g48050.1 68416.m05238 bromo-adjacent homology (BAH) domain-co... 29 2.4
At2g04620.1 68415.m00470 cation efflux family protein potential ... 29 3.1
At3g55580.1 68416.m06171 regulator of chromosome condensation (R... 27 7.2
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 27 7.2
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ... 27 9.5
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 303 TSAHSTDGDSEFSRRSNESDKEVSSTQGKHNRR 401
+S+ +D DSE S+ S + SS+ GKH +R
Sbjct: 234 SSSSDSDSDSESEAYSSSSYESSSSSDGKHRKR 266
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 303 TSAHSTDGDSEFSRRSNESDKEVSSTQGKHNRR 401
+S+ +D DSE S+ S + SS+ GKH +R
Sbjct: 234 SSSSDSDSDSESEAYSSSSYESSSSSDGKHRKR 266
>At3g48050.2 68416.m05239 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1613
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 274 NNPTVSFFGTPRPIPPMETPNFPEGPMS 357
NN + S F TP P+ P++T FP P+S
Sbjct: 1150 NNFSGSVFLTPTPLQPVKTLPFPVAPVS 1177
>At3g48050.1 68416.m05238 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1613
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 274 NNPTVSFFGTPRPIPPMETPNFPEGPMS 357
NN + S F TP P+ P++T FP P+S
Sbjct: 1150 NNFSGSVFLTPTPLQPVKTLPFPVAPVS 1177
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 28.7 bits (61), Expect = 3.1
Identities = 33/121 (27%), Positives = 53/121 (43%)
Frame = +1
Query: 130 QKYQKLHSFLDWTALQIRMATARGFFFDDETGELVTYGVNEETGEPMVNNPTVSFFGTPR 309
QK +L S T L +A FFF + V++G G P+ N TV FG
Sbjct: 272 QKRVRLLSLFLTTVLLFPLAIW-SFFFSGSGDDSVSFG---NLGWPLAN--TV-VFGV-- 322
Query: 310 PIPPMETPNFPEGPMSQTKKFQALKENIIAGSNPISHRMLLFPSVMIFPELFCVLLLILE 489
+ + N+ + S +KK + +E ++ I + FP + ++ L C LLL +
Sbjct: 323 ----LLSENYNDDKFSSSKKKDSEREFLVTFLCTIVLELFYFPELSLWGLLLCGLLLYIA 378
Query: 490 V 492
V
Sbjct: 379 V 379
>At3g55580.1 68416.m06171 regulator of chromosome condensation
(RCC1) family protein UVB-resistance protein UVR8,
Arabidopsis thaliana, EMBL:AF130441; contains Pfam
PF00415: Regulator of chromosome condensation (RCC1)
domain
Length = 488
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 217 ETGELVTYGVNEETGEPMVNNPTVSFFGTPRPIPP 321
E+G+L+T+G ++ G+ V + P P+PP
Sbjct: 81 ESGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPP 115
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = +3
Query: 345 RSNESDKEVSSTQGKHNRRLQSH*PPHAALSIRDDFSGALLCSAPHSRGVSTCEVPQEEQ 524
R DK++ NR+++ P ++ D LCS R + +VP++E
Sbjct: 584 REERRDKKMKKEDLASNRKIEGEIPTTETKTMTDRDG---LCSKKRLRSLVVADVPRDES 640
Query: 525 KIK 533
IK
Sbjct: 641 SIK 643
>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 781
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 318 TDGDSEFSRRSNESDKEVSSTQGKHNRRLQSH*PPHAALSIRDDFSGA 461
T+ S S +N + + SS+ GKH +R+ + IRD GA
Sbjct: 684 TEDPSPSSNNNNNAKRNRSSSSGKHGKRITHDNGASGSGRIRDKRLGA 731
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,772,270
Number of Sequences: 28952
Number of extensions: 269086
Number of successful extensions: 963
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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