Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0323
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 29 2.4
05_06_0108 - 25620685-25621115,25621517-25621602,25621963-25622507 29 2.4
04_04_1002 - 30025914-30026021,30026116-30026297,30026626-300269... 29 2.4
04_04_0503 - 25701050-25701343,25701431-25701528,25701629-257016... 29 4.2
03_02_0764 + 10990220-10992410,10992809-10993616,10994734-109949... 29 4.2
08_02_1030 - 23786760-23787812,23787891-23788319,23788410-237885... 28 5.6
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238... 28 5.6
08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,622... 28 7.4
03_05_0429 - 24157060-24157671,24158000-24158468,24158679-241587... 27 9.8
>08_01_0519 -
4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +1
Query: 244 GKHDVINYDNSSKNQKEHQRFWTLPKRTAETNQLRPTSSNLNQ----DPGQLSAGNSIKI 411
G HD + DN+++ + T K ET ++ P S N N D ++A S +
Sbjct: 244 GDHDAMEMDNTNEGNQAATHETTNFKDGVETPEISPNSVNGNSQLIGDGLVVTATTSAES 303
Query: 412 SPIDPR-ASRSFKSSTPSNKENVVDLSC 492
P+ A+ SS PS+ V++ +C
Sbjct: 304 PDTSPKEAALMATSSFPSSCNEVLEEAC 331
>05_06_0108 - 25620685-25621115,25621517-25621602,25621963-25622507
Length = 353
Score = 29.5 bits (63), Expect = 2.4
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +1
Query: 364 LNQDPGQLSAGNSIKISPIDPRASRSFKSSTPSNKEN--VVDLSCKLLSPVKSTMTNEEL 537
L ++ QLS+G I + PIDP + NK+ +V L K L +K T + +L
Sbjct: 250 LQKNGVQLSSGVIIGVKPIDPMHRQQLDERFAGNKQGGFMVSLPPKSL-VLKGTGASNQL 308
Query: 538 YAVIHKSKKKLN---IKDAPERA 597
A+ K N I+DA RA
Sbjct: 309 GALPRPYDPKANTNVIRDANRRA 331
>04_04_1002 -
30025914-30026021,30026116-30026297,30026626-30026908,
30026992-30027630
Length = 403
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 31 LGRESH-GVKDETPFRALIRKSLERL*LDYRHSSADKACLNIPHN 162
LGR+S G DE + KS+E L DY H+ A KA L PHN
Sbjct: 52 LGRQSQVGCLDE------LYKSVEDLSADYFHTKACKAMLMKPHN 90
>04_04_0503 -
25701050-25701343,25701431-25701528,25701629-25701689,
25701772-25701842,25701922-25702048,25702160-25702244,
25702346-25702409,25702732-25702793,25703214-25703284,
25703700-25703795,25703960-25704108,25704196-25704265,
25704483-25704523,25704668-25704743
Length = 454
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +1
Query: 319 KRTAETNQLRPTSSNLNQDPGQLSAGNSIKISPIDP----RASRSFKSST 456
K TA+T++ RPTS + N + + +S K + DP R SR F SS+
Sbjct: 356 KATADTDKTRPTSLSRNGSTSRRAVVSSSKPNCGDPSDTNRTSRLFSSSS 405
>03_02_0764 +
10990220-10992410,10992809-10993616,10994734-10994968,
10995028-10995169,10997365-10997444,10997636-10997776
Length = 1198
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 496 LLSP--VKSTMTNEELYAVIHKSKKKLNIKDAPERAESPALS 615
LL+P + S ++++ YA++H+ + I P R E PALS
Sbjct: 193 LLNPLWIHSRVSSKPFYAILHRIDVGVVIDLEPARTEDPALS 234
>08_02_1030 -
23786760-23787812,23787891-23788319,23788410-23788526,
23788820-23789083
Length = 620
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = +1
Query: 403 IKISPIDPRASRSFKSSTPSNKENVVDLSCKLLSPVKSTMTNEELYAVIHKSKKKLNIKD 582
I +P + R K TP NKE + + +L S K + + + +H+ K+ K+
Sbjct: 543 IGTTPFIEKLVRLIKDGTPKNKECALSVLLELGSKNKPLLVHALRFG-LHEDLSKI-AKN 600
Query: 583 APERAESPALSNISLS 630
RA+ A S I L+
Sbjct: 601 GTSRAQRKATSLIQLA 616
>01_01_0292 -
2387653-2387711,2388061-2388684,2388814-2389104,
2389338-2389390,2390496-2390968,2391090-2391432,
2391793-2391911,2392081-2392512,2392657-2392747,
2392833-2392942,2393681-2393875,2394581-2394622,
2395144-2395268,2395856-2395926,2396047-2396147
Length = 1042
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 241 RGKHDVINYDNSSKNQKEHQRFWTLPKRTAETNQLRPTSSNLNQ 372
RG H V N N +E QR+W P+ + P + N +Q
Sbjct: 711 RGDHPVQNGQNPVDEWEEQQRYWPSPRAPPVSPMGSPRTPNGSQ 754
>08_01_0704 +
6219530-6219609,6221595-6222243,6222339-6222437,
6222521-6222616,6222750-6222848,6222929-6223027,
6223811-6223882,6224508-6224597,6225173-6227329
Length = 1146
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +1
Query: 253 DVINYDNSSKNQKEHQRFWTLPKRTAETNQLRPTSSNLNQDPGQLSAGNSIKISPIDPRA 432
+V N+ N +K+ LP + ++ R SNL DP Q N I S I P A
Sbjct: 333 NVSNHKNELVQRKDDLIVDGLPDGWWKEDRPRKNGSNLKTDPQQYPMPNIIATSNIVPLA 392
Query: 433 S 435
S
Sbjct: 393 S 393
>03_05_0429 -
24157060-24157671,24158000-24158468,24158679-24158752,
24159231-24159280,24159368-24159449,24159526-24159575,
24159666-24159708,24159804-24159884,24159988-24160033,
24160151-24160197,24160358-24160423,24160701-24160767,
24160913-24160998
Length = 590
Score = 27.5 bits (58), Expect = 9.8
Identities = 26/95 (27%), Positives = 39/95 (41%)
Frame = +1
Query: 349 PTSSNLNQDPGQLSAGNSIKISPIDPRASRSFKSSTPSNKENVVDLSCKLLSPVKSTMTN 528
PT S + S GN ++ P R F SS S K+ S K LS S +
Sbjct: 283 PTESMCRSKGRRNSLGNERIVTFSKPSPERKFTSSIQSIKDYSTTRSVKDLSIDVSLV-- 340
Query: 529 EELYAVIHKSKKKLNIKDAPERAESPALSNISLSP 633
EE+ + + + +I P+R S ++ L P
Sbjct: 341 EEVSSKTTFTTRTSSIVKTPKRTPSKTITTPQLEP 375
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.128 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,587,509
Number of Sequences: 37544
Number of extensions: 306138
Number of successful extensions: 643
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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