Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0323
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 33 0.27
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 32 0.47
SB_54792| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_44186| Best HMM Match : HEAT (HMM E-Value=1.8e-05) 30 1.9
SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2) 30 1.9
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 29 2.5
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_25374| Best HMM Match : DUF1087 (HMM E-Value=3.2) 29 4.3
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92) 28 5.7
SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12) 28 7.6
SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_12953| Best HMM Match : Defensin_2 (HMM E-Value=3.6) 28 7.6
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 32.7 bits (71), Expect = 0.27
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Frame = +1
Query: 205 NPTLHKYNTAHLRGKHDVINYDNSSKNQKEHQRFWTLPKRTAETNQLRPTSSNLNQDPGQ 384
N + AH +DVI Q + ++FW KR+ N PT D GQ
Sbjct: 255 NKVVKALKVAHNNYLNDVIG----ESLQSDPKKFWRYVKRSRSENVGIPTLQRFTSDNGQ 310
Query: 385 L-----SAGNSIK-ISPIDPRASRSFKSSTPSNKENVVDLSCKLLSPVKSTMTN 528
L S+ +IK I +P + +S PS LS ++L + S ++N
Sbjct: 311 LPDLSTSSYPTIKDIIFTEPGIRKQLESLNPSKSVGPDGLSPRILRDLSSEISN 364
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 32.7 bits (71), Expect = 0.27
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Frame = +1
Query: 205 NPTLHKYNTAHLRGKHDVINYDNSSKNQKEHQRFWTLPKRTAETNQLRPTSSNLNQDPGQ 384
N + AH +DVI Q + ++FW KR+ N PT D GQ
Sbjct: 96 NKVVKALKVAHNNYLNDVIG----ESLQSDPKKFWRYVKRSRSENVGIPTLQRFTSDNGQ 151
Query: 385 L-----SAGNSIK-ISPIDPRASRSFKSSTPSNKENVVDLSCKLLSPVKSTMTN 528
L S+ +IK I +P + +S PS LS ++L + S ++N
Sbjct: 152 LPDLSTSSYPTIKDIIFTEPGIRKQLESLNPSKSVGPDGLSPRILRDLSSEISN 205
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/91 (20%), Positives = 39/91 (42%)
Frame = +1
Query: 247 KHDVINYDNSSKNQKEHQRFWTLPKRTAETNQLRPTSSNLNQDPGQLSAGNSIKISPIDP 426
+ ++ +S + KE Q +L ++ P ++ + + NS+ I P P
Sbjct: 2396 RRSLLKMTSSDEKVKETQSETSLASLKLSNQEILPHKASTAWMKDSVLSNNSLTIQPSPP 2455
Query: 427 RASRSFKSSTPSNKENVVDLSCKLLSPVKST 519
++ S S+PS + S ++L P S+
Sbjct: 2456 KSPPSRPKSSPSQSQQEKIDSVRMLEPTSSS 2486
>SB_54792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 578
Score = 30.3 bits (65), Expect = 1.4
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Frame = +1
Query: 160 NLVQSEGPTVDMNAINPTLHKYNTAHLRGKHDVINYDNSSKNQKEHQRFWTLPKRTAETN 339
N V + P+ + PT H+ TA D ++ ++ + + +RFWT+ + N
Sbjct: 416 NHVNNHIPSSHLTTGVPT-HRLPTARRLDFSDEMDINDQKPQKAKVRRFWTMLNKKRTRN 474
Query: 340 QLRPTSSNLNQDPGQ--LSAGNSIKISPIDP--RASRSFKSSTPSNKENVVD 483
RP+ S L++D + S S + + P R +SF N+ D
Sbjct: 475 --RPSLSELDEDAVKELKSEAESSAVPVVRPHLRRGKSFSGVVNRNRSQYSD 524
>SB_44186| Best HMM Match : HEAT (HMM E-Value=1.8e-05)
Length = 872
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 166 LDCAEYSNRLCQHWNVDS-PAIASLSSF*SVPEMVFRLL 53
LD E+SNR C+ +N S PA+ + + E+ FRL+
Sbjct: 433 LDFEEWSNRSCEEFNTPSNPALLQVELLELIAEVDFRLI 471
>SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)
Length = 2658
Score = 29.9 bits (64), Expect = 1.9
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 4/133 (3%)
Frame = +1
Query: 85 RKSLERL*LDYRHSSADKACLNIPHNLVQSEGPTVDMNAINPTLHKYNTAHLRGKHDVIN 264
RK+L RL L + + +N+PH+LVQ+E + + Y + K D ++
Sbjct: 1674 RKTL-RLDLGQENERPFEDVINLPHDLVQAETEGLPKGNVLLQSPPY-VQRAKPKADNVS 1731
Query: 265 YDNSSKNQKEHQ--RFWTLPKRTAETNQLRPTSSNLNQDPGQLSA--GNSIKISPIDPRA 432
SK +K + R + P R+ ++ N P +A GN DP+
Sbjct: 1732 TLQKSKTEKRRRTMRSTSTPHRSRNLSRSEEVDVNSAFFPEDFTALPGNLSGFQVRDPQG 1791
Query: 433 SRSFKSSTPSNKE 471
SR + S++E
Sbjct: 1792 SRHPDDTVISSRE 1804
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Frame = +1
Query: 391 AGNSIKISPIDPRASRSF----KSSTPSNKENVVDLSCKLLSPVKSTMTNEELYAVIHKS 558
AG + +P P +S TPS+K D K S TN+ L K
Sbjct: 270 AGGLVTAAPSPPDKKQSSVCHTPPKTPSSKTTPADAETKTSPSTTSPQTNKALRQKEEKE 329
Query: 559 KKKLNIKDAPER 594
K++L K A E+
Sbjct: 330 KQRLEAKAAKEK 341
>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1378
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 253 DVINYDNSSKNQKEHQRFWTLPK 321
DV+N+ +SSK++ E +FWT K
Sbjct: 71 DVLNFYDSSKDKTEPTKFWTTVK 93
>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1240
Score = 28.7 bits (61), Expect = 4.3
Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 1/104 (0%)
Frame = +1
Query: 148 NIPHNLVQSEGPTVDMNAINPTLHKYNTAHLRGKHDVINYDNSSKNQKEHQRFWTLPKRT 327
N P QS TV NA T Y T + N+ +Q +T P +T
Sbjct: 761 NAPVETTQSPETTVPYNAEMHTTDSYQTTEANDRQSQTTEANTPPSQTTEA--YTPPAQT 818
Query: 328 AETNQLRPTSSNLNQDPGQLSAG-NSIKISPIDPRASRSFKSST 456
E N ++ N P Q + N+ + P S +SST
Sbjct: 819 TEANTPPAQTTEANTPPVQTTESYNTPTETTALPYQETSTESST 862
>SB_25374| Best HMM Match : DUF1087 (HMM E-Value=3.2)
Length = 144
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Frame = +1
Query: 253 DVINYDNSSKNQKEHQRFWTLPKRTAETNQLRPTSSNLNQDPGQLSAGNSIKISPIDPRA 432
D N DNS+ + + ++ +N S N N D + NS K++ + +
Sbjct: 11 DTSNSDNSNSDNLNSDNLNSDKLKSDNSNSDNSNSDNSNSDKLKSDNSNSEKLNSNNSDS 70
Query: 433 SRSFKSSTPSNKENVVDLSCKLLSPVKST--MTNEELYAVIHKSKKKLN 573
+ S ++ S+ N + + L V S +N + +++ + KLN
Sbjct: 71 NNSNSDNSNSDNSNSDNSNSDKLKLVNSNPDNSNSDKLKLVNSNSDKLN 119
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +1
Query: 268 DNSSKNQKEHQRFWTLPKRTAETNQLRPTSSNLNQDPGQLSAGNSIKISPIDPRASRSFK 447
+N+SKN + + TL R +Q S NQD Q+ I +S +P + +
Sbjct: 3437 ENTSKNNDDCAKQGTLSDRVLSDDQAAKAVSKTNQDSQQIEQDKEI-VSSQEPNDTATMI 3495
Query: 448 SSTPSN 465
P++
Sbjct: 3496 QQDPTS 3501
>SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)
Length = 806
Score = 28.3 bits (60), Expect = 5.7
Identities = 31/115 (26%), Positives = 48/115 (41%)
Frame = +1
Query: 265 YDNSSKNQKEHQRFWTLPKRTAETNQLRPTSSNLNQDPGQLSAGNSIKISPIDPRASRSF 444
+ N Q++ Q W L + A + Q P S + PG +S+ S K P SRS
Sbjct: 613 HPNQGLVQQDTQGNWQLLLQAANSAQQLPGSIHPGVSPGLVSSSASSKNRRSSP-VSRSP 671
Query: 445 KSSTPSNKENVVDLSCKLLSPVKSTMTNEELYAVIHKSKKKLNIKDAPERAESPA 609
S+T N ++ + P ST T + S + +I +P ESP+
Sbjct: 672 HSTT--GTPNATGITSAI--PASST-TGPPITTETKSSVEVPDITGSPSCTESPS 721
>SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12)
Length = 1879
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 331 ETNQLRPTSSNLNQDPGQLSAGNSIKISPIDPRASRSFKSSTPSNKEN 474
+ N L+ +LN+ Q+S+GNS+K+S + K S K++
Sbjct: 98 QVNCLKEELKSLNKQLKQVSSGNSLKVSTVRRMTQIKKKPSQRDKKQS 145
>SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1441
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 550 HKSKKKLNIKDAPERAESPALSNISLSPVS 639
H+S+++ + P A+ PA+ + L P+S
Sbjct: 277 HRSRRRRHRPQQPPHAQKPAVQTVELEPIS 306
>SB_12953| Best HMM Match : Defensin_2 (HMM E-Value=3.6)
Length = 433
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +1
Query: 28 GLGRESHGVKDETPFR 75
G+G++ HG K+ETPF+
Sbjct: 321 GIGKKRHGSKNETPFK 336
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.311 0.128 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,136,425
Number of Sequences: 59808
Number of extensions: 358425
Number of successful extensions: 834
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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