Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0323
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.12 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     26   0.27 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   2.6  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   3.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 406 KISPIDPRASRSFKSSTPSNKENVVDLSCKLLSPVKSTMTNEEL 537
           K+SP  P+ S+    +TP  K+ V D+    +    ST  N+++
Sbjct: 273 KLSPATPKGSKCSMITTPEIKKEVEDMEYDDIKTELSTGMNDDI 316


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 81  DQKELREAIAGLSTFQC 131
           D   LRE +AG STF+C
Sbjct: 35  DNPSLREGLAGASTFRC 51


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = -3

Query: 387 KLTWILVEIRGGRS*LIRLSCSLWKSPESLMFLLVF----RRVIVINDVMFAAEMRCVVF 220
           K  W+L +++  R   I +  +LWK   S  ++ +      R  + N +   ++  C V 
Sbjct: 55  KYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 114

Query: 219 V 217
           +
Sbjct: 115 I 115


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = -3

Query: 387 KLTWILVEIRGGRS*LIRLSCSLWKSPESLMFLLVF----RRVIVINDVMFAAEMRCVVF 220
           K  W+L +++  R   I +  +LWK   +  ++ +      R  + N +   ++  C V 
Sbjct: 55  KYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 114

Query: 219 V 217
           +
Sbjct: 115 I 115


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = -3

Query: 378 WILVEIRGGRS*LIRLSCSLWKSPESLMFLLVF----RRVIVINDVMFAAEMRCVVFV 217
           W+L +++  R   I +  +LWK   S  ++ +      R  + N +   ++  C V +
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 58


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 638 LTGDKLIFDKAGD 600
           L+GDK  FDK GD
Sbjct: 523 LSGDKFKFDKNGD 535


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.128    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,858
Number of Sequences: 438
Number of extensions: 3182
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)