Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0323
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g26932.1 68416.m03370 double-stranded RNA-binding domain (DsR... 31 0.50
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ... 31 0.66
At3g44720.1 68416.m04813 prephenate dehydratase family protein s... 31 0.88
At4g16250.1 68417.m02465 phytochrome D (PHYD) nearly identical t... 30 1.2
At3g57120.1 68416.m06359 protein kinase family protein contains ... 30 1.2
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 30 1.5
At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to SP|P1... 29 2.7
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 29 2.7
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 29 2.7
At5g28823.1 68418.m03544 hypothetical protein 29 3.5
At4g36260.1 68417.m05157 zinc finger protein-related similar to ... 29 3.5
At5g49670.1 68418.m06150 hypothetical protein 28 4.7
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 28 6.2
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 28 6.2
At5g65920.1 68418.m08297 U-box domain-containing protein low sim... 27 8.2
At5g22630.1 68418.m02644 prephenate dehydratase family protein c... 27 8.2
At3g45940.1 68416.m04971 alpha-xylosidase, putative strong simil... 27 8.2
At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family... 27 8.2
>At3g26932.1 68416.m03370 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 301
Score = 31.5 bits (68), Expect = 0.50
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 1/114 (0%)
Frame = +1
Query: 268 DNSSKNQKEHQRFWTLPKRTAETNQLRPTSSNLNQDPGQLSAGNSIKISPIDPRASRSFK 447
+ +S + QRFW P RT T + S L + S+ DP+ K
Sbjct: 170 NEASSSSPPPQRFW--PSRTNLTQEQSKVKSLLEKCQEYAEKKQSLD----DPKPEMRIK 223
Query: 448 SSTPSNKENVVDLSC-KLLSPVKSTMTNEELYAVIHKSKKKLNIKDAPERAESP 606
+S+PS + V+ +C L P S + N + A + + + AP +P
Sbjct: 224 TSSPSPLSSSVERNCYSKLLPFPSFVLNHQKLAPAVHIRSVIPVCSAPPPKPNP 277
>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 446
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/65 (24%), Positives = 35/65 (53%)
Frame = +1
Query: 277 SKNQKEHQRFWTLPKRTAETNQLRPTSSNLNQDPGQLSAGNSIKISPIDPRASRSFKSST 456
SKNQ+EH+ + + +++ R ++N NQ+ GQ+++ ++ + + SS+
Sbjct: 313 SKNQEEHEMKNVISNGSLFSSEARNNTNNYNQNGGQIASMSATALLQKAAQMGSKRSSSS 372
Query: 457 PSNKE 471
SN +
Sbjct: 373 SSNSK 377
>At3g44720.1 68416.m04813 prephenate dehydratase family protein
similar to bacterial PheA gene products
Length = 424
Score = 30.7 bits (66), Expect = 0.88
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 322 RTAETNQLRPTSSNLNQDPGQLSAGNSIKISPIDPRASRSFKSS 453
R AE L+ + + DPG ++ + PI PR R FK+S
Sbjct: 274 RAAELYNLQILADGIQDDPGNVTRFLMLAREPIIPRTDRPFKTS 317
>At4g16250.1 68417.m02465 phytochrome D (PHYD) nearly identical to
SP|P42497 Phytochrome D {Arabidopsis thaliana}
Length = 1164
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +1
Query: 442 FKSSTPSNKENV-VDLSCKLLSPV--KSTMTNEELYAVIHKSKKKLNIKDAPERAESPAL 612
FKSS+ E V LL+P+ S T + YA++H+ + I P R E PAL
Sbjct: 170 FKSSSYLLLERAFVAREITLLNPIWIHSNNTGKPFYAILHRVDVGILIDLEPARTEDPAL 229
Query: 613 S 615
S
Sbjct: 230 S 230
>At3g57120.1 68416.m06359 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 456
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 109 LDYRHSSADKACLNIPHNLVQSEGPTVDMNAINPTLHKYNTAHLRGKHDVINYD-NSSKN 285
LDY H+ N+ HN ++S V N + + TA L G+ D ++ + + S+N
Sbjct: 239 LDYIHNKTGLKIENLVHNHIKSSAVIVTEPDFNAKICHFGTAQLCGETDEMSLERDESRN 298
Query: 286 QK 291
+
Sbjct: 299 SR 300
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 454 TPSNKENVVDLSCKLLSPVKSTMTNEELY 540
+PS KE V DL LLSP++ + ++Y
Sbjct: 1035 SPSYKEKVTDLLSPLLSPIRPAIVRRQVY 1063
>At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to
SP|P14713 Phytochrome B {Arabidopsis thaliana}
Length = 1172
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 496 LLSPV--KSTMTNEELYAVIHKSKKKLNIKDAPERAESPALS 615
LL+PV S T + YA++H+ + I P R E PALS
Sbjct: 186 LLNPVWIHSKNTGKPFYAILHRIDVGVVIDLEPARTEDPALS 227
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I)
[Bos taurus]
Length = 884
Score = 29.1 bits (62), Expect = 2.7
Identities = 25/100 (25%), Positives = 42/100 (42%)
Frame = +1
Query: 217 HKYNTAHLRGKHDVINYDNSSKNQKEHQRFWTLPKRTAETNQLRPTSSNLNQDPGQLSAG 396
H+ N+ RGK + ++E R + + + PTS+ + D + S
Sbjct: 782 HRTNSKEDRGKR------KEKEKEEERSRHRRAENSSKDKRRRSPTSNESSDDSKRKSRS 835
Query: 397 NSIKISPIDPRASRSFKSSTPSNKENVVDLSCKLLSPVKS 516
+SP R+ R K S+PS+ E+ D K S K+
Sbjct: 836 RRRSVSPSPVRSRR--KRSSPSSDESSDDSKRKSSSKRKN 873
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I)
[Bos taurus]
Length = 897
Score = 29.1 bits (62), Expect = 2.7
Identities = 25/100 (25%), Positives = 42/100 (42%)
Frame = +1
Query: 217 HKYNTAHLRGKHDVINYDNSSKNQKEHQRFWTLPKRTAETNQLRPTSSNLNQDPGQLSAG 396
H+ N+ RGK + ++E R + + + PTS+ + D + S
Sbjct: 752 HRTNSKEDRGKR------KEKEKEEERSRHRRAENSSKDKRRRSPTSNESSDDSKRKSRS 805
Query: 397 NSIKISPIDPRASRSFKSSTPSNKENVVDLSCKLLSPVKS 516
+SP R+ R K S+PS+ E+ D K S K+
Sbjct: 806 RRRSVSPSPVRSRR--KRSSPSSDESSDDSKRKSSSKRKN 843
>At5g28823.1 68418.m03544 hypothetical protein
Length = 568
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +1
Query: 376 PGQLSAGNSIKISPIDPRASRSFKSSTPSNKENVVDLSCKLLSPVKSTMTNEE 534
P ++S N+ + + + SF+ ++ SNK V+DL+ ++ S M + +
Sbjct: 458 PAKVSTNNTTSTAGVKSSTNTSFRKASSSNKFAVLDLASDVVLREDSNMVDSD 510
>At4g36260.1 68417.m05157 zinc finger protein-related similar to
lateral root primordium 1 (LRP1) [Arabidopsis thaliana]
GI:882341; contains Pfam profile PF05142: Domain of
unknown function (DUF702), TIGR01624: LRP1 C-terminal
domain, TIGR01623: putative zinc finger domain, LRP1
type
Length = 322
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 262 NYDNSSKNQKEHQRFWTLPKRTAETNQLRPTSS 360
N D +NQ++ + W + A TN + P+SS
Sbjct: 14 NGDEEEENQQQQKTNWVWYRSNANTNNINPSSS 46
>At5g49670.1 68418.m06150 hypothetical protein
Length = 1184
Score = 28.3 bits (60), Expect = 4.7
Identities = 26/104 (25%), Positives = 46/104 (44%)
Frame = +1
Query: 316 PKRTAETNQLRPTSSNLNQDPGQLSAGNSIKISPIDPRASRSFKSSTPSNKENVVDLSCK 495
PK TAE +L +L++D G + + + PI + +ST S E D+
Sbjct: 148 PKATAEIKELE---LDLSKDRGSGNFFMKLYLLPIFVQIGEPHVTSTHS-PEMDSDICLA 203
Query: 496 LLSPVKSTMTNEELYAVIHKSKKKLNIKDAPERAESPALSNISL 627
+P K+ + + H K L+ + P R SP++ N+ +
Sbjct: 204 RQTPSKTAEGSSS--SSFHCEKISLSCEFGPNRKSSPSIKNVEV 245
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +1
Query: 274 SSKNQKEH--QRFWTLPKRTAETNQLRPTSSNLNQDPGQLSAGNSIKISPIDPRASRSFK 447
++K +EH Q W + E+N S++L+ LS+ N DP+ + K
Sbjct: 787 NAKCWQEHTLQLVWVTRQSNRESNNNNNNSNSLSVSRDNLSSKNKCASVSNDPKPAVEVK 846
Query: 448 SSTPSNKEN 474
+S+ EN
Sbjct: 847 TSSTEEPEN 855
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +1
Query: 274 SSKNQKEH--QRFWTLPKRTAETNQLRPTSSNLNQDPGQLSAGNSIKISPIDPRASRSFK 447
++K +EH Q W + E+N S++L+ LS+ N DP+ + K
Sbjct: 787 NAKCWQEHTLQLVWVTRQSNRESNNNNNNSNSLSVSRDNLSSKNKCASVSNDPKPAVEVK 846
Query: 448 SSTPSNKEN 474
+S+ EN
Sbjct: 847 TSSTEEPEN 855
>At5g65920.1 68418.m08297 U-box domain-containing protein low
similarity to immediate-early fungal elicitor protein
CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 444
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 544 VIHKSKKKLNIKDAPERAESPALSNISLSPVSSE 645
V+ KKKL++K+ E P + ++ + P+S E
Sbjct: 38 VVTDEKKKLDLKEMISELELPEIPSVFICPISLE 71
>At5g22630.1 68418.m02644 prephenate dehydratase family protein
contains Pfam profile PF00800: prephenate dehydratase
Length = 425
Score = 27.5 bits (58), Expect = 8.2
Identities = 25/100 (25%), Positives = 36/100 (36%)
Frame = +1
Query: 154 PHNLVQSEGPTVDMNAINPTLHKYNTAHLRGKHDVINYDNSSKNQKEHQRFWTLPKRTAE 333
P L Q+EG +N + P A + HD H R AE
Sbjct: 228 PQALAQTEG---SLNKLTPK------AAIEAFHDTAAAAEYIAANNLHDTAAVASARAAE 278
Query: 334 TNQLRPTSSNLNQDPGQLSAGNSIKISPIDPRASRSFKSS 453
L+ + + D G ++ + PI PR R FK+S
Sbjct: 279 LYGLQILADGIQDDAGNVTRFLMLARDPIIPRTDRPFKTS 318
>At3g45940.1 68416.m04971 alpha-xylosidase, putative strong
similarity to alpha-xylosidase precursor GI:4163997 from
[Arabidopsis thaliana]
Length = 868
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 157 HNLVQSEGPTVDMNAINPTLHK 222
H LV +G +DMN IN T HK
Sbjct: 426 HELVPIDGLWIDMNEINATGHK 447
>At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family
protein common family member:At2g33490 [Arabidopsis
thaliana]
Length = 608
Score = 27.5 bits (58), Expect = 8.2
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +1
Query: 211 TLHKYNTAHLRGKHDVINYDNSSKNQKEHQRF--WTLPKRTAETNQLRPTSSNLNQDPGQ 384
T KY ++H D S + ++ + F + LP ++ +P S LN P
Sbjct: 320 TRDKYLSSHSAPLFPEKKPDVSERLRQANPSFNAYVLPTPN-DSRYSKPVSQALNPRPTN 378
Query: 385 LSAGNSIKISPIDPRASRSFKSSTPSN 465
SAGN SP++P S SN
Sbjct: 379 HSAGNIWHSSPLEPIKSGKDGKDAESN 405
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.311 0.128 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,756,795
Number of Sequences: 28952
Number of extensions: 253981
Number of successful extensions: 543
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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