Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0322
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    29   0.70 
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    28   0.92 
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    28   1.2  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    27   2.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.8  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   4.9  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.9  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        26   4.9  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    25   6.5  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   6.5  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   6.5  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    25   8.6  

>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 215 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRP 316
           PPP     P+  +  PP   +Q  +PP    Y P
Sbjct: 209 PPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPP 242


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 209 QRPPPNHEQIPS-EPNQEPPNYGEQDRFPPNHNGYRPPNG 325
           QR PP+  QIP  +P Q+ P        PPN  G   P+G
Sbjct: 346 QRLPPSSIQIPPPKPMQKFPANAASSESPPNATGNFLPSG 385


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 198 PNCPCTLKLKACDSPPRTAPCTCLCTS*APLRIPVISPPLHSLT 67
           PN P   +L    SP +T+P     T  AP  +P  +P   SLT
Sbjct: 538 PNQPSRPRLPRVASPLKTSPVKLAVTPQAPSPLPSSNPSQASLT 581


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 230 EQIPSEPNQEPPNYGEQDRFPPNHN 304
           +  PS PN++ P   E DRF P+ +
Sbjct: 57  KSFPSSPNKKRPRTNEGDRFIPSRD 81


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +2

Query: 206 QQRPPPNHEQ--IPSEPNQ-EPPNYGEQDRFPPN 298
           QQ P P  E+  +PSEP+Q +P  Y +    P N
Sbjct: 497 QQAPSPKEEERPLPSEPSQNQPAEYRDTPDTPRN 530


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 407 NYEGPHNFGNKYPKPIYENQNNYGRPQPEFGNNNHRPTTPNH 532
           NY+  H +     +P  + QNN  R QP     N   T PN+
Sbjct: 235 NYQWSHEY-----RPHTQYQNNLLRAQPNVNCENFPTTVPNY 271


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 230 EQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNG 325
           E+    PNQ P N+   +R P  +N YR  NG
Sbjct: 285 EEYGFNPNQ-PSNFRSPNRAPSTNNRYRGWNG 315


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 248 PNQEPPNYGEQDRFPPNHNGYRPPNGQ 328
           P+  PPN G      PN++G + PN Q
Sbjct: 81  PSGPPPNTGANSYGNPNYSGPQLPNTQ 107


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 464 QNNYGRPQPEFGNNNHRPTTPN 529
           Q+NY  P+   G+  HRP+ P+
Sbjct: 538 QSNYTPPELNDGSRQHRPSRPS 559


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = +2

Query: 119 DVHKQVQGAVLGGLSQAFNFNVHGQFGVNQQRPPPNHEQIPSEPNQ--EPPNYGEQDRFP 292
           D  K  +  ++   S+ +N    G F     +P  N + IP    +  +    G   RFP
Sbjct: 210 DSGKAKEQKIVSEQSKKYNMFEEG-FLAKLHKPGGNTQLIPERMKEHLQATGGGVVTRFP 268

Query: 293 PNHNGY 310
           P  NGY
Sbjct: 269 PEPNGY 274


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
 Frame = +2

Query: 167 AFNFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGY--RPPNGQNGY 337
           A N N    +     +P P++  +PS      PN G     P   +GY    P  Q GY
Sbjct: 102 AINNNFGYSYVGQSSQPVPSYNPLPSYNTASLPNAGIPAAMPGMPSGYPGTVPIPQGGY 160


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 395 NDNSNYEGPHNFGNKYPKPIYENQNNYG 478
           N NS Y   +N+GN      Y + NNYG
Sbjct: 53  NSNSTYGSSNNYGN------YGSSNNYG 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,067
Number of Sequences: 5004
Number of extensions: 47537
Number of successful extensions: 147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)