Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0322
(605 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 37 0.011
SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.034
SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.059
SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3) 33 0.18
SB_34081| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29) 32 0.41
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.55
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051) 31 0.72
SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23) 31 0.96
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2) 31 0.96
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_14279| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08) 30 1.3
SB_37079| Best HMM Match : Homeobox (HMM E-Value=1.2e-28) 30 1.7
SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_984| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_16879| Best HMM Match : Stig1 (HMM E-Value=1) 29 2.2
SB_47086| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23) 29 2.9
SB_20262| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_11167| Best HMM Match : Mucin (HMM E-Value=4.9) 29 2.9
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 29 2.9
SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_38971| Best HMM Match : SRCR (HMM E-Value=0) 29 3.9
SB_12046| Best HMM Match : fn3 (HMM E-Value=0) 29 3.9
SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86) 28 5.1
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_43401| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_11360| Best HMM Match : PDZ (HMM E-Value=0) 28 5.1
SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20) 28 5.1
SB_54036| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 28 5.1
SB_18457| Best HMM Match : GPW_gp25 (HMM E-Value=2.7) 28 5.1
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 28 5.1
SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027) 28 5.1
SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009) 28 6.7
SB_26314| Best HMM Match : SURF6 (HMM E-Value=2.8) 28 6.7
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42) 28 6.7
SB_23434| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31) 27 8.9
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 239 PSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYE 340
P+ +EPP GE D PP G PP G+ G E
Sbjct: 495 PAAEGEEPPPEGEGDDLPPEEGGEVPPEGEEGAE 528
>SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = +2
Query: 215 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 337
PPP + S P Q+ YG PP GY PP GQ GY
Sbjct: 297 PPPGQQGYGSPPGQQ--GYGP----PPGQQGYGPPAGQQGY 331
Score = 34.7 bits (76), Expect = 0.059
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +2
Query: 215 PPPNHEQIPSEPNQE---PPNYGEQDRFPPNHNGYRPPNGQNGY 337
PPP + P Q+ PP + PP GY PP GQ GY
Sbjct: 279 PPPGQQGYGPPPGQQGYGPPPGQQGYGSPPGQQGYGPPPGQQGY 322
Score = 34.3 bits (75), Expect = 0.078
Identities = 22/55 (40%), Positives = 24/55 (43%)
Frame = +2
Query: 173 NFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 337
NFN+H + PP Q P P Q YG PP GY PP GQ GY
Sbjct: 213 NFNLH----IVGYGPPG---QQPGSPGQHQ-GYGTLPGPPPGQQGYGPPPGQQGY 259
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +2
Query: 215 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 337
PPP + P Q+ YG PP GY PP GQ GY
Sbjct: 243 PPPGQQGYGPPPGQQ--GYGA----PPGQQGYGPPLGQQGY 277
>SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 993
Score = 34.7 bits (76), Expect = 0.059
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 392 QNDNSNYEGPHNFGNKYPKPIYENQNNYGRPQPEFGNNNHRP 517
Q+ N+ GNK +P+ + NN GRP + GNN RP
Sbjct: 687 QDGNNTGRALDQGGNKTGRPLNQGGNNTGRPLDQGGNNTGRP 728
>SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
Length = 515
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +2
Query: 152 GGLSQAFNFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPN 298
G + Q FNV G + P NH P +P Q P +G D+F PN
Sbjct: 167 GHMFQPPGFNVQG----GNKPGPENHSGPPFKPGQRPYQHGGPDQFGPN 211
>SB_34081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = -3
Query: 201 TPNCPCTLKL----KACDSPPRTAPCTCLCTS*APLRIPVISPPLHSLTT 64
TP C ++L CDSP R T C S P+R+ +PP HS+ T
Sbjct: 111 TPTCDSPMRLLHATPTCDSPMRLLHATPPCDS--PMRLLHATPPCHSMKT 158
>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
Length = 1202
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 191 QFGVNQQRPPPNHEQIPSEPNQEPPNYG--EQDRFPPNHNGYRPPN 322
Q+ NQQ P P H P + + P Y + + PP H+ + PN
Sbjct: 497 QYNQNQQVPHPQHPPPPYQRSASYPGYSPEQYQQVPPPHSQMQQPN 542
>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 31.5 bits (68), Expect = 0.55
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +2
Query: 206 QQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 337
Q PP + + P P Q P +Q P + Y PP Q Y
Sbjct: 300 QSYPPTSQQSYPPTPQQSYPLTSQQSYLPTSQQSY-PPTSQQSY 342
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = +2
Query: 206 QQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 334
Q PP + + P P Q P Q FPP P N Q G
Sbjct: 332 QSYPPTSQQSYPPSPQQSYPQTSIQQNFPPTQ---PPNNSQQG 371
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Frame = +2
Query: 131 QVQGAVLGG-----LSQAFNFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPP 295
Q QGA+ G + + Q G + PP + Q+P+ P +G +P
Sbjct: 637 QYQGAMAGNNQPPTSTMQYQETTRQQMGTTRAYPPHPYAQVPAPCGNVQPQHGHPGMYPQ 696
Query: 296 NHNGYRP 316
+ G P
Sbjct: 697 HPQGSYP 703
>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
Length = 421
Score = 31.1 bits (67), Expect = 0.72
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +2
Query: 188 GQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP 319
G G NQ PPP H P +P P G + PP GY PP
Sbjct: 168 GYPGYNQ--PPPGHYPAPGQPGGYYPPPGGYQQPPP--GGYAPP 207
>SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)
Length = 1105
Score = 30.7 bits (66), Expect = 0.96
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +2
Query: 395 NDNSNYEGPHNFGNKYPKPIYENQNNYGRPQPEFGNNNHRPTT 523
NDN N +N N Y+N NN GNNN + TT
Sbjct: 11 NDNDNDNNNNNDNNNDNYNDYDNGNNNNNNNNNNGNNNGKTTT 53
>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
Length = 352
Score = 30.7 bits (66), Expect = 0.96
Identities = 33/113 (29%), Positives = 37/113 (32%), Gaps = 2/113 (1%)
Frame = +2
Query: 197 GVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYEXXXXXXXXXXXX 376
GV P P IP P N + +P N N P NG GY
Sbjct: 195 GVLPPPPAPPGALIPPPPAPPTFNNNQNMGYPSNGNMGYPSNGNMGY--------PSNNN 246
Query: 377 XXXXXQNDNSNYEGPHN-FGNKYPKPIYENQN-NYGRPQPEFGNNNHRPTTPN 529
N N Y G N GN P N N N G P GN + P+ N
Sbjct: 247 NMGYPSNGNMGYPGNRNGMGNNMGYPSNGNGNGNMGYPSNGNGNMGY-PSNGN 298
>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 203 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPN 322
N + P + P PP +G PP++ G+ PPN
Sbjct: 260 NHEGDPYHGGPFNQAPPGFPPRWGPPPHMPPDYRGFPPPN 299
>SB_14279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 200 VNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRP 316
V + +P + IP+E NQ N E D F P G +P
Sbjct: 50 VKKFKPGYQYSSIPTEANQGHQNEEEDDMFDPRPKGLQP 88
>SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08)
Length = 836
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 179 NVHGQFGVNQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 322
N+ N PPN Q + + P+ PPN+ + R P+ Y PPN
Sbjct: 140 NISQSVRANPHYSPPNISQSVRANPHYSPPNFRQSVRANPH---YSPPN 185
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 179 NVHGQFGVNQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 322
N+ N PPN Q + + P+ PPN + R P+ Y PPN
Sbjct: 155 NISQSVRANPHYSPPNFRQSVRANPHYSPPNIRQSVRANPH---YSPPN 200
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 179 NVHGQFGVNQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 322
N+ N PPN Q + + P+ PPN + R P+ Y PPN
Sbjct: 200 NISQSVRANPHYSPPNIRQSVRANPHYSPPNISQSVRANPH---YSPPN 245
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 179 NVHGQFGVNQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 322
N+ N PPN Q + + P+ PPN + R P+ Y PPN
Sbjct: 185 NIRQSVRANPHYSPPNISQSVRANPHYSPPNIRQSVRANPH---YSPPN 230
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 203 NQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 322
N PPN Q + + P+ PPN + R P+ Y PPN
Sbjct: 133 NPHYSPPNISQSVRANPHYSPPNISQSVRANPH---YSPPN 170
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 203 NQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 322
N PPN Q + + P+ PPN + R P+ Y PPN
Sbjct: 178 NPHYSPPNIRQSVRANPHYSPPNISQSVRANPH---YSPPN 215
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 179 NVHGQFGVNQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHN 304
N+ N PPN Q + + P+ PPN+ + R P+++
Sbjct: 215 NIRQSVRANPHYSPPNISQSVRANPHYSPPNFRQSVRANPHYS 257
>SB_37079| Best HMM Match : Homeobox (HMM E-Value=1.2e-28)
Length = 246
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 206 QQRP--PPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQN 331
Q +P PP + S P Q+PP R P + Y+PPN N
Sbjct: 139 QHKPATPPQSHYVNSNPWQQPP---VDMRMPMGRSNYQPPNMMN 179
>SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 1/104 (0%)
Frame = +2
Query: 224 NHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYEXXXXXXXXXXXXXXXXXQNDN 403
N++ + N N + D N N N N +NDN
Sbjct: 213 NYDNNDNNDNDNNDNNDKNDNNDNNDNNGNNDNYDNNDNNDNNDNNDNNDNNDNNDKNDN 272
Query: 404 S-NYEGPHNFGNKYPKPIYENQNNYGRPQPEFGNNNHRPTTPNH 532
+ N + +N GN Y+N +NY + NN++ N+
Sbjct: 273 NDNNDNYNNNGNNDNNDNYDNNDNYDN-NDNYNNNDNNDNNDNN 315
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 1/90 (1%)
Frame = +2
Query: 266 NYGEQDRFPPNHNGYRPPNGQNGYEXXXXXXXXXXXXXXXXXQNDNS-NYEGPHNFGNKY 442
NY D + N N N N NDN+ NY+ N GN
Sbjct: 296 NYDNNDNYNNNDNNDNNDNNDNYDNNGNNGNNDNYNNYDNNDNNDNNDNYD---NNGNND 352
Query: 443 PKPIYENQNNYGRPQPEFGNNNHRPTTPNH 532
Y+N +NY + NN++ N+
Sbjct: 353 NNDNYDNNDNYDN-NDNYNNNDNNDNNDNN 381
Score = 27.5 bits (58), Expect = 8.9
Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 4/107 (3%)
Frame = +2
Query: 203 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYEXXXXXXXXXXXXXX 382
N N ++ N NY D N N N N +
Sbjct: 224 NNDNNDKNDNNDNNDNNGNNDNYDNNDNNDNNDNNDNNDNNDNNDKNDNNDNNDNYNNNG 283
Query: 383 XXXQNDN----SNYEGPHNFGNKYPKPIYENQNNYGRPQPEFGNNNH 511
NDN NY+ N+ N +N +NY N+N+
Sbjct: 284 NNDNNDNYDNNDNYDNNDNYNNNDNNDNNDNNDNYDNNGNNGNNDNY 330
>SB_984| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Frame = +2
Query: 218 PPNHEQIPSEPN---QEPP-NYGEQDRFPPNHNGYRPPNGQN 331
PP Q P +P Q PP NY P G +PP GQN
Sbjct: 171 PPGVYQGPHQPPPYCQPPPGNYSGYGAMDPRQGGAQPPMGQN 212
>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 29.5 bits (63), Expect = 2.2
Identities = 28/112 (25%), Positives = 38/112 (33%), Gaps = 3/112 (2%)
Frame = +2
Query: 200 VNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRP-PNGQ-NGYEXXXXXXXXXXX 373
+N ++ PN + N PP G + P HNG + PN NG +
Sbjct: 259 LNGRKSNPNPPLNGRKSNPNPPLNGRKSNPNPPHNGRKSNPNPPLNGRKSNPNPPLNGRK 318
Query: 374 XXXXXXQND-NSNYEGPHNFGNKYPKPIYENQNNYGRPQPEFGNNNHRPTTP 526
N SN PHN P P + + P P G H +P
Sbjct: 319 SNPNPPHNGRKSNPNPPHNSRKSNPNPPLNGRKSNPNP-PHNGPKVHPQPSP 369
Score = 28.3 bits (60), Expect = 5.1
Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 3/112 (2%)
Frame = +2
Query: 200 VNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRP-PNGQ-NGYEXXXXXXXXXXX 373
+N ++ PN + N PP+ G + P NG + PN NG +
Sbjct: 270 LNGRKSNPNPPLNGRKSNPNPPHNGRKSNPNPPLNGRKSNPNPPLNGRKSNPNPPHNGRK 329
Query: 374 XXXXXXQNDN-SNYEGPHNFGNKYPKPIYENQNNYGRPQPEFGNNNHRPTTP 526
N SN P N P P + + +P P++ + +P+ P
Sbjct: 330 SNPNPPHNSRKSNPNPPLNGRKSNPNPPHNGPKVHPQPSPQWPKVHPQPSPP 381
>SB_16879| Best HMM Match : Stig1 (HMM E-Value=1)
Length = 232
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Frame = +2
Query: 218 PPNHEQIPSEPN---QEPP-NYGEQDRFPPNHNGYRPPNGQN 331
PP Q P +P Q PP NY P G +PP GQN
Sbjct: 171 PPGVYQGPHQPPPYCQPPPGNYSGYGAMDPRQGGAQPPMGQN 212
>SB_47086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 203 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYE 340
N R PP++ + + ++ PP+Y E PNHN R N E
Sbjct: 406 NLFRGPPSYHSVCLD-HELPPSYDEAVNLCPNHNPVRTDRTANASE 450
>SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)
Length = 1178
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Frame = +2
Query: 218 PPNHEQIPSEPNQEPPNYGEQDRFP---PNH-NGYRP 316
PP Q+PSEP P+ G P NH NGY P
Sbjct: 66 PPGRRQVPSEPWYHHPDSGYPSSSPTSKSNHYNGYLP 102
>SB_20262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 1/84 (1%)
Frame = +2
Query: 224 NHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYEXXXXXXXXXXXXXXXXXQNDN 403
N+ ++ N NY D N N Y N N NDN
Sbjct: 133 NYNNDNNDNNDNNDNYDNYDDNDNNDNNYNYDNNDNNGNNDNYDNNDNNDNNDNNDNNDN 192
Query: 404 S-NYEGPHNFGNKYPKPIYENQNN 472
+ NY+ N N Y+N N
Sbjct: 193 NDNYDNNDNNDNNDNNDNYDNNGN 216
>SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Frame = +2
Query: 218 PPNHEQIPSEPNQEPPNYGEQDRFP---PNH-NGYRP 316
PP Q+PSEP P+ G P NH NGY P
Sbjct: 110 PPGRRQVPSEPWYHHPDSGYPSSSPTSKSNHYNGYLP 146
>SB_11167| Best HMM Match : Mucin (HMM E-Value=4.9)
Length = 297
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 161 SQAFNFNVHGQFGVNQQRPPPNHEQIPSEPNQEP-PNYGEQD 283
S F +G FG ++Q P N + S P+QE P + +QD
Sbjct: 131 SLCFTVTPNGYFGTSRQNPAYNADGCTSGPSQETGPVHNQQD 172
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 197 GVNQQRPPPNHEQIPSEPNQEPPNYG--EQDRFPP 295
G + Q PPP E +PS+ + PP YG Q+ PP
Sbjct: 636 GQSMQPPPPKTEGVPSQ--EYPPGYGVEGQESQPP 668
>SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 392 QNDNSNYEGPHNFGNKYPKPIYENQNNYGRPQPEFGNNNHR 514
+ DN+N +N NK Y N NN R NNN++
Sbjct: 97 RTDNNNRNNNNNNNNKRTDNNYRNNNNNRRTDNNNRNNNNK 137
>SB_38971| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2436
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 395 NDNSNYEGPHNFGNKYPKPIYENQNNYGRPQPEFGNNNHRPTTPNH 532
+DN YE P GN K +Y NQ P + NH +P H
Sbjct: 2356 SDNPLYEKPVKQGNNPHKQVYGNQQE--NPVYDHKQENHIYDSPTH 2399
>SB_12046| Best HMM Match : fn3 (HMM E-Value=0)
Length = 652
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 395 NDNSNYEGPHNFGNKYPKPIYENQNNYGRPQPEFGNNNHRPTTPNH 532
+DN YE P GN K +Y NQ P + NH +P H
Sbjct: 572 SDNPLYEKPVKQGNNPHKQVYGNQQE--NPVYDHKQENHIYDSPTH 615
>SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)
Length = 809
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 191 QFGVNQQRPP-PNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 334
Q+ VN+Q+ P P +Q + N Y ++ FP H P G G
Sbjct: 571 QYQVNEQQGPMPQQQQPQGDMNCGSYQYNRRNSFPLYHRAMSQPAGAYG 619
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 224 NHEQIPSEPNQEPPNYGEQDRFPPNHNG 307
++E P +P QEPP + +P +H G
Sbjct: 449 SYESSPPDPTQEPPRHVASKSWPSDHLG 476
>SB_43401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 292 WESILLPIIWWFLIRFARYLFMVWWWSLLIHAK 194
W S LP+ W R A+++F+ WWS + +
Sbjct: 14 WTSKDLPMAWTSFKRHAQFMFV--WWSFAVEVR 44
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 28.3 bits (60), Expect = 5.1
Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 12/114 (10%)
Frame = +2
Query: 212 RPPPNHEQIPSEPNQEPP--------NYGEQ-DRFPPNHNGYRPPNGQNGYEXXXXXXXX 364
R PP +P P + PP YG++ DR PP+ PP ++GY
Sbjct: 99 RGPPRGPPLPGPPRRGPPPDRDSGYGGYGDRYDRPPPDRR--PPPPDRSGYPPPRDYDRG 156
Query: 365 XXXXXXXXXQNDNSNYEGPHNFGNKYPKP--IYE-NQNNYGRPQPEFGNNNHRP 517
+ + E +G+KYP P Y + YG P + + P
Sbjct: 157 YADRPRERPPPPSYSSERV-GYGDKYPPPERSYSGGERGYGPPPARSADRGYGP 209
>SB_11360| Best HMM Match : PDZ (HMM E-Value=0)
Length = 625
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 206 QQRPPPNHEQIPSEPNQEPPNYGEQDRFPP 295
Q PPP E I + P+ P GE + PP
Sbjct: 122 QTPPPPTPEVIETAPSPSPGENGEVNHVPP 151
>SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20)
Length = 315
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +2
Query: 254 QEPPNYGEQDRF-PPNHNGYRPP 319
+EPP Y + + + PP GYRPP
Sbjct: 43 EEPPVYAKPNNYQPPPQPGYRPP 65
>SB_54036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +2
Query: 395 NDNSNYEGPHNFGNKYPKPIYENQNNYGRPQPEFGNNNHRPTTPNH 532
N+N+N +N N K Y N NN NNN+ N+
Sbjct: 17 NNNNNNNNNNNNNNNNNKNNYNNNNNNNNNNNNNNNNNNNNNNNNN 62
>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 506
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +2
Query: 212 RPPPN--HEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 334
R PP+ H+ + SE ++E E D P N Y P NG
Sbjct: 321 RQPPSIPHDLVTSEQDRESKFLHEFDELPDIENAYTPLPSMNG 363
>SB_18457| Best HMM Match : GPW_gp25 (HMM E-Value=2.7)
Length = 577
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -3
Query: 201 TPNCPCTLKL----KACDSPPRTAPCTCLCTS*APLRIPVISPPLHS 73
TP C ++L CDS R T C S P+R+P ++PP S
Sbjct: 85 TPPCDSPMRLLHVTPPCDSSMRLLHATPPCDS--PMRLPHVTPPCDS 129
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +2
Query: 212 RPPPNHEQIPSEPNQEPPNY----GEQDRFPPNHNGYRPP 319
R PP+H + PS + PP++ R+ P+H Y PP
Sbjct: 382 RYPPSHSRYPSSHPRYPPSHLRYPPSSLRYLPSHLRYPPP 421
>SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)
Length = 292
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 395 NDNSNYEGPHNFGNKYPKPIYENQNNYGRPQPEFGNNNH 511
NDN+N+ N N + + +N NN+ R + NNNH
Sbjct: 205 NDNNNHFRKSNDNNNHYRNSNDNNNNHFRKSND--NNNH 241
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 395 NDNSNYEGPHNFGNKYPKPIYENQNNYGRPQPEFGNNNHRPTTPNH 532
NDN+N+ N N + + +N N+Y R + NN+ R + N+
Sbjct: 195 NDNNNHYRNSNDNNNHFRKSNDNNNHY-RNSNDNNNNHFRKSNDNN 239
>SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009)
Length = 392
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +2
Query: 194 FGVNQQRPPPNH--EQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 337
FG++ RPP + + + + P PP R N +G PPN + G+
Sbjct: 340 FGMSPVRPPTHSMAQAMGAPPPPLPPMQPRAPRMDYNWSGQYPPNMRGGW 389
>SB_26314| Best HMM Match : SURF6 (HMM E-Value=2.8)
Length = 222
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/81 (19%), Positives = 27/81 (33%)
Frame = +2
Query: 185 HGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYEXXXXXXXX 364
H + N NH++ +++ N+ E D+ P +GQ
Sbjct: 83 HDEDEKNHDEDEKNHDEDEENHDEDEKNHDEDDKCYDEDRVEEPQSGQESASESGEVSGR 142
Query: 365 XXXXXXXXXQNDNSNYEGPHN 427
N++SN E HN
Sbjct: 143 IEGGKPNGDDNNSSNGEDDHN 163
>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
Length = 1712
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 221 PNHEQIPSEPNQEPPNYGEQDRFPPNHNGYR 313
PN + I EP+++P G + P+H G R
Sbjct: 709 PNKDVIMDEPHRDPKQLGSRKHRDPDHLGSR 739
>SB_23434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -2
Query: 295 GWESILLPIIWWFLIRFARYLFMVWWWSL 209
GW +++ ++WW+ + + +VWWW L
Sbjct: 97 GWLNVV--VVWWWQLN----VVVVWWWRL 119
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +2
Query: 197 GVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNG 325
G N PPP S P+Q PP G PP G PP G
Sbjct: 927 GGNAPLPPPPPGG--SAPSQPPPPGGNAPPPPPPPGGSAPPPG 967
>SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1249
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +2
Query: 395 NDNSNYEGPHNFGNKYPKPIYENQNNYGRPQPEFGNNNHRPTTPNH 532
N+NS+ +N N N NN NNN+ TT N+
Sbjct: 6 NNNSSNNNNNNNNNSSSNSSSNNNNNNNNNNNNNNNNNNNNTTTNN 51
>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
Length = 662
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 188 GQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFP 292
GQ + QQ+ P NH+Q Q+PPN +Q +P
Sbjct: 292 GQMQLGQQQVP-NHQQSQHPGQQQPPNQ-QQPLYP 324
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 203 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP 319
N PPP + P+ P PPN +PP N PP
Sbjct: 171 NAPYPPPPYPPPPNPPYPPPPN----PPYPPPPNAPNPP 205
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Frame = +2
Query: 188 GQFGVNQQRPPPNHEQIPSEPNQE----PPNYGEQDRFPPNHNGYRPP 319
G GVN PP N+ P P PP + PP NG PP
Sbjct: 340 GGGGVNPPPPPTNNPPSPPPPTNNTPPPPPPTNKPPPPPPPTNGPPPP 387
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,625,202
Number of Sequences: 59808
Number of extensions: 393278
Number of successful extensions: 1922
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1658
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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