Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0322
(605 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g53260.1 68414.m06035 hypothetical protein low similarity to ... 44 8e-05
At3g18810.1 68416.m02389 protein kinase family protein contains ... 35 0.048
At2g39740.1 68415.m04880 expressed protein 34 0.064
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi... 33 0.19
At1g03530.1 68414.m00334 expressed protein similar to hypothetic... 32 0.26
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 32 0.34
At4g19590.1 68417.m02879 DNAJ heat shock N-terminal domain-conta... 32 0.34
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 31 0.45
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 31 0.45
At1g12810.1 68414.m01488 proline-rich family protein contains pr... 31 0.59
At2g37780.1 68415.m04639 DC1 domain-containing protein contains ... 31 0.78
At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1) c... 30 1.0
At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1) c... 30 1.0
At4g32640.1 68417.m04646 sec23/sec24 transport protein-related 30 1.0
At4g03120.1 68417.m00425 proline-rich family protein similar to ... 30 1.0
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 30 1.0
At4g08013.1 68417.m01283 hypothetical protein low similarity to ... 30 1.4
At3g15000.1 68416.m01897 expressed protein similar to DAG protei... 30 1.4
At3g16510.1 68416.m02107 C2 domain-containing protein contains s... 29 1.8
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 29 2.4
At2g18470.1 68415.m02151 protein kinase family protein contains ... 29 2.4
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 29 3.2
At3g01560.1 68416.m00086 proline-rich family protein contains pr... 29 3.2
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 29 3.2
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 29 3.2
At5g59170.1 68418.m07416 proline-rich family protein contains pr... 28 4.2
At4g25520.1 68417.m03680 transcriptional co-regulator family pro... 28 4.2
At3g30520.1 68416.m03863 hypothetical protein 28 4.2
At1g33680.1 68414.m04166 KH domain-containing protein similar to... 28 4.2
At5g56250.2 68418.m07020 expressed protein 28 5.5
At5g56250.1 68418.m07019 expressed protein 28 5.5
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 28 5.5
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 28 5.5
At4g17060.1 68417.m02572 expressed protein 28 5.5
At3g24550.1 68416.m03083 protein kinase family protein contains ... 28 5.5
At3g14595.1 68416.m01848 expressed protein 28 5.5
At2g23440.1 68415.m02798 expressed protein 28 5.5
At5g18700.1 68418.m02219 protein kinase-related contains protein... 27 7.3
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 27 7.3
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 27 7.3
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 27 7.3
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 27 7.3
At1g75240.1 68414.m08741 zinc finger homeobox family protein / Z... 27 7.3
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 27 7.3
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 27 7.3
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 27 9.6
At3g56810.1 68416.m06318 expressed protein 27 9.6
At3g49840.1 68416.m05449 proline-rich family protein contains pr... 27 9.6
At3g22350.1 68416.m02822 F-box family protein similar to F-box p... 27 9.6
At2g45490.1 68415.m05658 protein kinase, putative contains prote... 27 9.6
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 27 9.6
At1g50150.1 68414.m05624 hypothetical protein similar to hypothe... 27 9.6
At1g23540.1 68414.m02960 protein kinase family protein contains ... 27 9.6
>At1g53260.1 68414.m06035 hypothetical protein low similarity to
SP|Q38732 DAG protein, chloroplast precursor
{Antirrhinum majus}
Length = 358
Score = 44.0 bits (99), Expect = 8e-05
Identities = 32/117 (27%), Positives = 39/117 (33%)
Frame = +2
Query: 179 NVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYEXXXXXX 358
N G +RPPPN + P PP+ G PP+ +PPN Y
Sbjct: 181 NDRGNQDTGYRRPPPNQGMGGAPP--PPPHIGNNPNMPPH---IQPPNMNQNYRGPPPPP 235
Query: 359 XXXXXXXXXXXQNDNSNYEGPHNFGNKYPKPIYENQNNYGRPQPEFGNNNHRPTTPN 529
N N NY+GP P QN G P P + P PN
Sbjct: 236 NMNQNYQGPPAPNMNQNYQGP--------PPSNMGQNYQGPPPPNMNQSYQGPPPPN 284
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 34.7 bits (76), Expect = 0.048
Identities = 27/111 (24%), Positives = 36/111 (32%), Gaps = 2/111 (1%)
Frame = +2
Query: 206 QQRPPPNHEQIPSEPNQEPPNYGEQ-DRFPPNHNGYRPPNGQ-NGYEXXXXXXXXXXXXX 379
Q PPP+ PS P PP+ PP+ + PP+ Q N
Sbjct: 27 QSSPPPSDSSSPSPPAPPPPDDSSNGSPQPPSSDSQSPPSPQGNNNNDGNNGNNNNDNNN 86
Query: 380 XXXXQNDNSNYEGPHNFGNKYPKPIYENQNNYGRPQPEFGNNNHRPTTPNH 532
N+N N G + N N N GNNN+ N+
Sbjct: 87 NNNGNNNNDNNNGNNKDNNNNGN---NNNGNNNNGNDNNGNNNNGNNNDNN 134
>At2g39740.1 68415.m04880 expressed protein
Length = 474
Score = 34.3 bits (75), Expect = 0.064
Identities = 38/160 (23%), Positives = 55/160 (34%), Gaps = 5/160 (3%)
Frame = +2
Query: 65 VVSECNGGLITGILSGAHDVHKQVQGAVLGGLSQAFNF----NVHGQFGVNQQRPPPNHE 232
+VSECN I GIL+G H + L A N+HGQ Q+ N
Sbjct: 294 LVSECNRNSIIGILTGQHIQESLYRTISLPSQHHANGMHNVRNLHGQARPQNQQMQQNWS 353
Query: 233 QIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYEXXXXXXXXXXXXXXXXXQNDNSNY 412
Q + PN PP++ + P N + N + S Y
Sbjct: 354 QSYNTPN--PPHWPPLTQSRPQQNWTQ--NNPRNLQGQPPVQGQTWPVITQTQTQQKSPY 409
Query: 413 EGPHNFGNKYPKPIYENQNNYGRPQPEF-GNNNHRPTTPN 529
+ + +NQ + G+P G N+ RP N
Sbjct: 410 KSGNRPLKNTSAGSSQNQGHIGKPSGHMNGVNSARPAYTN 449
>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 579
Score = 32.7 bits (71), Expect = 0.19
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +2
Query: 107 SGAHDVHKQVQGAVLGGLSQAF---NFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGE 277
+ A+D H+ Q + + +F+ Q NQ R P + Q ++ + P YG
Sbjct: 53 AAANDYHQNPQSGSPSQHQRPYPPQSFDSQNQTNTNQ-RVPQSPNQWSTQHGGQIPQYGG 111
Query: 278 QDRFPPNHNGYRPP-NGQN 331
Q+ P H G RPP GQN
Sbjct: 112 QN---PQHGGQRPPYGGQN 127
>At1g03530.1 68414.m00334 expressed protein similar to hypothetical
protein GB:O14360
Length = 797
Score = 32.3 bits (70), Expect = 0.26
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Frame = +2
Query: 242 SEPNQEPPNYGEQDRFPPNHNGYRP-PNGQNGYEXXXXXXXXXXXXXXXXXQNDNSNYEG 418
S+P P + D FPPN+ +RP N QN Y+ QN N
Sbjct: 553 SDPQMGGPR-PQMDGFPPNNAAWRPQSNQQNPYQLPPIPNQMGMQIPFMAMQNQNQMMFQ 611
Query: 419 PHNFGNKYPKP 451
P G + P P
Sbjct: 612 PQFNGGQMPMP 622
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 31.9 bits (69), Expect = 0.34
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Frame = +2
Query: 206 QQRPPPNHEQIPSEPNQEPPNYGEQDR---FPP---NHNGYRPPNGQNG 334
Q PPP + P P PP YG Q R PP G PP+G G
Sbjct: 170 QGGPPPPYGMRPPYPGPPPPQYGGQQRPMMIPPPGGMMRGPPPPHGMQG 218
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = +2
Query: 197 GVNQQRPPPNHEQ--IPSEPNQEPPNYGEQDRFPPNHNGY--RPPNGQN 331
G+ + PPP+ Q PS P PP G F P H G PPN N
Sbjct: 205 GMMRGPPPPHGMQGPPPSRPGMPPP--GGAPMFAPPHPGMPPAPPNHHN 251
>At4g19590.1 68417.m02879 DNAJ heat shock N-terminal
domain-containing protein protein YJL162c, Saccharomyces
cerevisiae, PIR2:S56945; contains Pfam PF00226: DnaJ
domain;
Length = 345
Score = 31.9 bits (69), Expect = 0.34
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 203 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPN 322
NQQ+ PP+ ++ P ++PPN +Q P + +PPN
Sbjct: 149 NQQKQPPDQQKQPPNQPRQPPNQQKQ----PQNEPKQPPN 184
Score = 31.9 bits (69), Expect = 0.34
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 203 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPN 298
NQ R PPN ++ P ++PPN Q + PPN
Sbjct: 163 NQPRQPPNQQKQPQNEPKQPPN---QPKQPPN 191
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 203 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPN 298
NQ + PN ++ P + ++PPN Q R PPN
Sbjct: 142 NQPKQQPNQQKQPPDQQKQPPN---QPRQPPN 170
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 31.5 bits (68), Expect = 0.45
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 215 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPN 322
PPP ++ PS P+ PP + PP+H+ P N
Sbjct: 135 PPPAPKKSPSTPSLPPPTPKKSPPPPPSHHSSSPSN 170
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 31.5 bits (68), Expect = 0.45
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 215 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNG 325
PPP+H P + PP + PP HN +PP G
Sbjct: 619 PPPSHSPPPPVYSPPPPTFSP----PPTHNTNQPPMG 651
>At1g12810.1 68414.m01488 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 129
Score = 31.1 bits (67), Expect = 0.59
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = +2
Query: 197 GVNQQRPPPNHEQIPSEPNQ-EPPNYGEQDRFPPNHNGYRPPNG---QNGYE 340
G PPP + P P PP++ E P + GY PP+ + GY+
Sbjct: 15 GYQSHYPPPGYPSAPPPPGYPSPPSHHEGYPPPQPYGGYPPPSSRPYEGGYQ 66
>At2g37780.1 68415.m04639 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 286
Score = 30.7 bits (66), Expect = 0.78
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Frame = +2
Query: 200 VNQQRPPPNHEQIPSEPNQEP-------PNYGEQDRFPPNHNGYRPPNGQNGY 337
V +QR H PS P+Q P+ G+ + +PP GY+P N QN Y
Sbjct: 121 VTKQRSLHGHAGQPSPPHQYGQGIPYGYPHMGQPEPYPPQGGGYQPQN-QNYY 172
>At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1)
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH1 (SUVH1) GI:13517742
Length = 670
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +2
Query: 200 VNQQRPPPNHEQIPSEP---NQEPPNYGEQDRFPPNHNGYRPPNGQNG 334
+NQ + PP H+Q + P Q+PP + + +R P+ NG
Sbjct: 67 LNQAQYPPQHQQPQNPPPVYQQQPPQHASEPSLVTPLRSFRSPDVSNG 114
>At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1)
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH1 (SUVH1) GI:13517742
Length = 670
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +2
Query: 200 VNQQRPPPNHEQIPSEP---NQEPPNYGEQDRFPPNHNGYRPPNGQNG 334
+NQ + PP H+Q + P Q+PP + + +R P+ NG
Sbjct: 67 LNQAQYPPQHQQPQNPPPVYQQQPPQHASEPSLVTPLRSFRSPDVSNG 114
>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
Length = 1069
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 212 RPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNG 325
RPPP Q P Q+ P+YG R P + PP G
Sbjct: 56 RPPPPFGQSPQPFPQQSPSYGAPQRGPSPMSRPGPPAG 93
>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
small nuclear ribonucleoprotein C; contains proline rich
extensin domains, INTERPRO:IPR002965
Length = 207
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +2
Query: 218 PPNHEQIPSEPNQEPPNYGEQDRFPPNH-NGYRPPNG 325
PP IP + PPNY PP H N PP+G
Sbjct: 150 PPGMAPIPGQGGGPPPNYNGLPPPPPYHTNPAAPPSG 186
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 185 HGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNG 307
HG G +PPP+H + +PP +G + PP+H G
Sbjct: 43 HGGGGGGGSKPPPHHG---GKGGGKPPPHGGKGGGPPHHGG 80
>At4g08013.1 68417.m01283 hypothetical protein low similarity to
SCARECROW [Zea mays] GI:10178637
Length = 113
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +2
Query: 215 PPPNHEQIPSEPNQEPPNYGEQDRFP-PNHNGYRPPNGQ 328
PPP E+ P E P EQ P PN Y P+ Q
Sbjct: 57 PPPRSEEAQFNPPPEAPLNQEQSESPNPNSQAYTHPSSQ 95
>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
(required for chloroplast differentiation and palisade
development) GB:Q38732 [Antirrhinum majus]
Length = 395
Score = 29.9 bits (64), Expect = 1.4
Identities = 27/112 (24%), Positives = 37/112 (33%)
Frame = +2
Query: 149 LGGLSQAFNFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQ 328
+GG + Q + RPP N+ P PPNYG P N+ G PP
Sbjct: 289 MGGPRHPPPYGAPPQNNMGGPRPPQNYGGTP------PPNYGGAP--PANNMGGAPPPNY 340
Query: 329 NGYEXXXXXXXXXXXXXXXXXQNDNSNYEGPHNFGNKYPKPIYENQNNYGRP 484
G QN+N +G +Y N++ G P
Sbjct: 341 GGGPPPQYGAVPPPQYGGAPPQNNNYQQQGSGMQQPQYQNNYPPNRDGSGNP 392
>At3g16510.1 68416.m02107 C2 domain-containing protein contains
similarity to shock protein SRC2 [Glycine max]
gi|2055230|dbj|BAA19769 ; contains Pfam profile
PF00168:C2 domain
Length = 360
Score = 29.5 bits (63), Expect = 1.8
Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 2/103 (1%)
Frame = +2
Query: 215 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYEXXXXXXXXXXXXXXXXXQ 394
PPP PS N PP Y PP H Y PP G + ++
Sbjct: 244 PPP-----PSASNLYPPPYYSTS--PPQHQSYPPPPGHSFHQTQPSQSFHGFAP------ 290
Query: 395 NDNSNYEGPHNFGNKYPKPIYENQNNYGRPQPEF--GNNNHRP 517
S+ + H +G YP P YG P + NNN++P
Sbjct: 291 ---SSPQNQHGYG--YPPPTSPGY-GYGCPTTQVPPKNNNNKP 327
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Frame = +2
Query: 215 PPPNHEQ--IPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 337
PP + Q P P PP +PP GY P G GY
Sbjct: 28 PPAGYPQQGYPPPPGAYPPAGYPPGAYPPAPGGYPPAPGYGGY 70
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +2
Query: 197 GVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNH--NGYRPPNGQNG 334
G + PPP+ P+ PPN PP+ G R G NG
Sbjct: 43 GDSSSSPPPDSTSPPAPQAPNPPNSSNNSPSPPSQGGGGERGNGGNNG 90
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = +2
Query: 197 GVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYE 340
G N + PP + P P ++PP++ P PP + Y+
Sbjct: 350 GYNPEEPPYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSMYD 397
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 209 QRPPPNHEQIPSEPNQEPPNYGEQDRFPPN 298
Q+PPP + PS N E P Y +Q +PPN
Sbjct: 339 QQPPPQLQH-PSGYNPEEPPYPQQS-YPPN 366
>At3g01560.1 68416.m00086 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 511
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = +2
Query: 191 QFGVNQQR--PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 337
QF Q+ PPP+H P P PP Y P+ Y+ P Q Y
Sbjct: 278 QFSSQQEPYCPPPSH---PQPPPSNPPPYQAPQTQTPHQPSYQSPPQQPQY 325
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = +2
Query: 215 PPPNHE---QIPSEPN-QEPPNYGEQDRFPPNHNGYRP 316
PPP Q P +P+ Q PP + + PP +GY P
Sbjct: 300 PPPYQAPQTQTPHQPSYQSPPQQPQYPQQPPPSSGYNP 337
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 152 GGLSQAFNFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNY 271
G S ++ HG + +Q PPP++ P Q+ P Y
Sbjct: 384 GASSSSYTMPPHGHYPQHQPYPPPSYGGYMQPPYQQYPPY 423
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 443 PKPIYENQNNYGRPQPEFGNNNHRPTTPN 529
P+P + NQ GR P+F + RP PN
Sbjct: 376 PRPQFPNQQPTGRFDPQFPSQPPRPQFPN 404
>At5g59170.1 68418.m07416 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 288
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 206 QQRPPPNHEQIPSEPNQEP-PNYGEQDRFPPNHNGYRPP 319
+Q PPP + P E P Y Q+++PP Y PP
Sbjct: 144 EQYPPPIKKYPPPEHYPPPIKKYPPQEQYPPPIKKYPPP 182
>At4g25520.1 68417.m03680 transcriptional co-regulator family
protein contains similarity to GP|18033922|gb|AAL57277
SEUSS transcriptional co-regulator [Arabidopsis
thaliana]
Length = 748
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 173 NFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPN 268
N N Q G + Q P PN Q PS +Q+ N
Sbjct: 578 NSNTGKQEGFSSQNPTPNSNQSPSSSSQQRHN 609
>At3g30520.1 68416.m03863 hypothetical protein
Length = 397
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +2
Query: 212 RPPPNHEQIPSEPN----QEPPNYGEQDRFPPNHNGYRPPNGQNGY 337
R PPN Q + PN + PPN PPN +G P N Q G+
Sbjct: 296 RTPPNVAQWGTPPNVAQCRTPPNAPHWGT-PPNAHGTTPTNVQYGF 340
>At1g33680.1 68414.m04166 KH domain-containing protein similar to
FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
sapiens]
Length = 759
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 215 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 337
PP + P P+ P NY +P + +RPPN GY
Sbjct: 411 PPQWGSRGPHGPHSMPYNYHHGGPYPSQGSHFRPPN-SGGY 450
>At5g56250.2 68418.m07020 expressed protein
Length = 811
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 200 VNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 337
V QR P+H + +P + + + + P+ N PP NGY
Sbjct: 755 VINQREEPSHNESSPKPTSQFLDLSKTQQASPSVNLLHPPYSGNGY 800
>At5g56250.1 68418.m07019 expressed protein
Length = 811
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 200 VNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 337
V QR P+H + +P + + + + P+ N PP NGY
Sbjct: 755 VINQREEPSHNESSPKPTSQFLDLSKTQQASPSVNLLHPPYSGNGY 800
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +2
Query: 212 RPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYR----PPNGQNG 334
RPPP +Q P PP YG++ PP R PP+G G
Sbjct: 189 RPPP--QQFSGPP---PPQYGQRPMIPPPGGMMRGPPPPPHGMQG 228
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +2
Query: 212 RPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYR----PPNGQNG 334
RPPP +Q P PP YG++ PP R PP+G G
Sbjct: 189 RPPP--QQFSGPP---PPQYGQRPMIPPPGGMMRGPPPPPHGMQG 228
>At4g17060.1 68417.m02572 expressed protein
Length = 310
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +2
Query: 173 NFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 337
NF HG N +P PN Q ++ + E++ F P R + NGY
Sbjct: 146 NFASHGFKPKNFSKPEPNFSQDLDYDDEFDDDRAEREGFNPRIQSSRSSSRVNGY 200
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +2
Query: 221 PNHEQIPSEPNQEPPN--YGEQDRFPPNHNGYRPPNGQNG 334
P++ + P PNQ PPN G R P N P + +G
Sbjct: 96 PSNPRSPPSPNQGPPNTPSGSTPRTPSNTKPSPPSDSSDG 135
>At3g14595.1 68416.m01848 expressed protein
Length = 132
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 203 NQQRPPPNHEQIPS-EPNQEPPNYGEQDRFPPNHNGY 310
+QQ+PPP + + + P Q+PP G P GY
Sbjct: 18 HQQQPPPPFQGVSNYPPQQQPPATGYPQPAQPYAQGY 54
>At2g23440.1 68415.m02798 expressed protein
Length = 82
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 239 PSEPNQEPPNYGEQDRFPPNHNGYRPPNGQN 331
P+EP + PP++G D F P G+ P G +
Sbjct: 50 PTEPLESPPSHG-VDTFRPTEPGHSPGIGHS 79
>At5g18700.1 68418.m02219 protein kinase-related contains protein
kinase domain, INTERPRO:IPR000719
Length = 1366
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 197 GVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYE 340
G+N + P E+ PN+ PP Y E+DR + G G+E
Sbjct: 273 GINTK--PCLSERNGDRPNKTPPKYREKDRKGGSKQNENSIQGSKGHE 318
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 215 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 334
PPP++ Q P PP Y Q P+++ PP+ G
Sbjct: 48 PPPSYAQPPEYTQPPPPLYSTQPYSAPSYSA--PPSQSYG 85
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 215 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 334
PPP++ Q P PP Y Q P+++ PP+ G
Sbjct: 48 PPPSYAQPPEYTQPPPPLYSTQPYSAPSYSA--PPSQSYG 85
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 215 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 334
PPP++ Q P PP Y Q P+++ PP+ G
Sbjct: 48 PPPSYAQPPEYTQPPPPLYSTQPYSAPSYSA--PPSQSYG 85
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 215 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 334
PPP++ Q P PP Y Q P+++ PP+ G
Sbjct: 48 PPPSYAQPPEYTQPPPPLYSTQPYSAPSYSA--PPSQSYG 85
>At1g75240.1 68414.m08741 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 309
Score = 27.5 bits (58), Expect = 7.3
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
Frame = +2
Query: 86 GLITGILSGAHDVHKQVQGAVLGGL--SQAFNFNVHGQFGVNQ------QRPPP-----N 226
G I + A D H+ + G+ S + + H + NQ +RPPP N
Sbjct: 105 GTIEALRCAACDCHRNFHRKEMDGVGSSDLISHHRHHHYHHNQYGGGGGRRPPPPNMMLN 164
Query: 227 HEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP 319
+P PN +P ++ + PP G P
Sbjct: 165 PLMLPPPPNYQPIHHHKYGMSPPGGGGMVTP 195
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Frame = +2
Query: 206 QQRPPPNHEQIPSE----PNQEPPNYGEQDRFPP 295
Q PPP +EQ PS P+ PP Y PP
Sbjct: 576 QSPPPPKYEQTPSPREYYPSPSPPYYQYTSSPPP 609
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +2
Query: 215 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP 319
PPP + S P PP Y PP Y PP
Sbjct: 608 PPPTYYATQSPPPPPPPTYYAVQSPPPPPPVYYPP 642
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 203 NQQRPPPNHEQIPSEPNQE-PPNYGEQDRFPPNHNGYRPP 319
+Q PPP + +PS Q+ PPN+ Q P H Y PP
Sbjct: 389 HQSYPPPPYGYMPSPYQQQYPPNHHHQPS-PMQH--YAPP 425
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = +2
Query: 191 QFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 337
Q G+N Q + PS Q PN G +P G+ P GY
Sbjct: 638 QGGMNPQMSQSHFMGAPSGVFQGQPNSGGPQMYPQGRGGFNRPQMIPGY 686
>At3g56810.1 68416.m06318 expressed protein
Length = 332
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 34 EKKNRNLCSISSQ*MQWWANYRYPQRGSRCAQTSAGC 144
+ K NL S SS W N+ P+R S + S+GC
Sbjct: 3 KSKRENLLSPSSS---WRENHNPPRRNSNSSAVSSGC 36
>At3g49840.1 68416.m05449 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 606
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +2
Query: 191 QFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQ 328
Q G Q P + P P PP Y Q PP H G PP +
Sbjct: 536 QQGYGQGYPAQGYPP-PQYPQGHPPQYPYQGP-PPPHYGQAPPKNK 579
>At3g22350.1 68416.m02822 F-box family protein similar to F-box
protein family, AtFBX9 (GI:20197985) [Arabidopsis
thaliana]; contains Pfam PF00646: F-box domain; contains
TIGRFAM TIGR01640 : F-box protein interaction domain
Length = 378
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -2
Query: 262 WFLIRFARYLFMVWWWSLLIHAKLSMYVEV 173
W+L RF+ WWW I+ + V++
Sbjct: 348 WWLCRFSEKFTKKWWWFPFIYNYVPSLVQI 377
>At2g45490.1 68415.m05658 protein kinase, putative contains protein
kinase domain, Pfam:PF00069; similar to protein kinase
p46XlEg22 [Xenopus laevis] gi|609280|emb|CAA78914
Length = 288
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +2
Query: 56 VLLVVSECNGGLITGILSGAHDVHKQVQGAVLGGLSQAFNFNVHGQFGVNQQRPPPN 226
+ L++ +GG + G+L + +Q + LSQA + HG+ +++ P N
Sbjct: 95 IFLILEYAHGGELYGVLKQNGHLTEQQAATYIASLSQALAY-CHGKCVIHRDIKPEN 150
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +2
Query: 212 RPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 334
+PPP Q+P P PP + PP PP G G
Sbjct: 707 KPPP--VQVPPTPTYSPPIKPPPVQVPPTPTTPSPPQGGYG 745
>At1g50150.1 68414.m05624 hypothetical protein similar to
hypothetical protein GB:AAD50048 GI:5734783 from
[Arabidopsis thaliana]
Length = 358
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 173 NFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDR 286
+F+ H Q GV Q N+E+ SE +E P +++R
Sbjct: 98 HFDSHAQLGVQDQIEWLNNEKRASESRKESPFLNKRER 135
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Frame = +2
Query: 215 PPPNHEQIPSEPNQE-----PPNYGEQDRFPPNHNGYRPP 319
PPP + PS P PPN + PP+ + PP
Sbjct: 95 PPPTSNESPSPPEDSETPPAPPNESNDNNPPPSQDLQSPP 134
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,194,079
Number of Sequences: 28952
Number of extensions: 273829
Number of successful extensions: 1104
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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