Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0321
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    78   4e-16
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   4.3  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   4.3  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    25   4.3  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    25   5.7  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    24   7.6  
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    24   7.6  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    24   7.6  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    24   10.0 

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 78.2 bits (184), Expect = 4e-16
 Identities = 39/90 (43%), Positives = 59/90 (65%)
 Frame = +3

Query: 129 YHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERYLKAARPYGEGAVQFY 308
           +H  +   ATLK I  RLKS+KNI+KIT+++K V+  K TRA+R ++A+  Y   + + +
Sbjct: 24  FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVF 83

Query: 309 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVH 398
           + A    PE+  K L VA +SD+GLCG +H
Sbjct: 84  KEAGTKAPEEG-KTLMVACSSDKGLCGGIH 112


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 183  KSVKNIQKITQSMKMVSAAKYTRAERYLK 269
            + VKN+Q    S+K +SAA +TR    +K
Sbjct: 958  QQVKNMQLELASLKQISAAFFTRIPLKIK 986


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 156 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERYLKAARPYGEGA 296
           T + IS RL   +NI+++ Q  + + +A +  A+R  K  +P  +GA
Sbjct: 549 TDQIISSRLVVFRNIRELQQQNQNLLSAVHELADRMEKDEKPDLDGA 595


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +3

Query: 69  ICKMLGRFGPGVGTQVVAVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKY 245
           +   LG F   VG    A V   P  N+A  +   +R K+V ++ K+   +      +Y
Sbjct: 69  LADQLGNFVDYVGGPEYAHVLLSPLENLAATEETVVRDKAVDSLNKVCICLSQEQLEQY 127


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 333 EDDPKQLFVAMTSDRGLCGAVH 398
           + +P  L VA+ SDR  CG+++
Sbjct: 876 KQNPYDLLVALDSDRKACGSLY 897


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 144  RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERYL 266
            +N    KAI I  K VKNI   T ++++       RA + L
Sbjct: 1071 KNKQPRKAILIEFKGVKNINAETVTLRVKDLTHLHRAYKGL 1111


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/22 (40%), Positives = 19/22 (86%)
 Frame = +3

Query: 159 LKAISIRLKSVKNIQKITQSMK 224
           L+AIS+RL++++  +++ QSM+
Sbjct: 86  LQAISLRLQTMRTSEQMMQSMR 107


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 150 YSCLADGKPPPRLGCRHPVRSV-PTFCKFY 64
           Y+  A+G PP   GC HP+  V   F KF+
Sbjct: 209 YNFAAEGIPPAG-GCLHPLMKVREEFRKFF 237


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 131 VNHRHDLGADTRSEASQHFANFMGVYR*NLP 39
           +N   D+ A+  +E S     F+G +R N+P
Sbjct: 1   MNTSQDVNAEAANERSALLPRFLGSHRGNVP 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,842,175
Number of Sequences: 5004
Number of extensions: 37903
Number of successful extensions: 101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)