Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0321
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821...    56   8e-09
07_03_0571 - 19602755-19603831                                         54   3e-08
10_08_1013 - 22239396-22239536,22240629-22240715,22240787-22241131     26   9.5  
04_01_0260 - 3506672-3508981                                           26   9.5  
04_01_0254 + 3388215-3388553,3388869-3390830                           26   9.5  
02_04_0552 - 23804154-23805326                                         26   9.5  

>10_05_0025 +
           8215685-8215716,8215859-8215937,8216340-8216412,
           8216712-8216864,8217456-8217569,8217649-8217776,
           8219004-8219099,8219479-8219601,8219694-8219810,
           8219983-8220104,8220439-8220508
          Length = 368

 Score = 56.4 bits (130), Expect = 8e-09
 Identities = 31/79 (39%), Positives = 48/79 (60%)
 Frame = +3

Query: 162 KAISIRLKSVKNIQKITQSMKMVSAAKYTRAERYLKAARPYGEGAVQFYERAEVTPPEDD 341
           +A+  R+KSV+NIQKIT++MKMV+A+K    +   + +R   +    F       P  D 
Sbjct: 60  RALRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQ---PFTALLGDVPSVDV 116

Query: 342 PKQLFVAMTSDRGLCGAVH 398
            K + VA+TSD+GLCG ++
Sbjct: 117 KKNVIVAITSDKGLCGGIN 135


>07_03_0571 - 19602755-19603831
          Length = 358

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 11/90 (12%)
 Frame = +3

Query: 156 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERYLKAARPYGEGAVQ-FYERAEVTPP 332
           +L+ +  R+ SV+N QKIT++MK+V+AAK  RA+  + ++RP+ E  V+  Y   +    
Sbjct: 37  SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQT 96

Query: 333 ED----------DPKQLFVAMTSDRGLCGA 392
           ED            K   V +T +RGLCG+
Sbjct: 97  EDIDLPLTRIRPVKKVALVVLTGERGLCGS 126


>10_08_1013 - 22239396-22239536,22240629-22240715,22240787-22241131
          Length = 190

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +2

Query: 173 HPS*ICEKYPENHTVHEDGV-SC*IHPC*ALPESCSS 280
           HP   C K+P   T H+D    C  + C  +P  CSS
Sbjct: 123 HPRSACAKFPFGTTPHDDHCEQCFCYVC-DVPAPCSS 158


>04_01_0260 - 3506672-3508981
          Length = 769

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 82  WDASDRVSAPKSWRWFTISQTGIWLL*RPFPSVLNL*KISRKSHSP*RW 228
           W  S     P+SW    +  +G W + R F   LNL +    S++P R+
Sbjct: 331 WTYSYLNDRPRSWLHHALLCSGKWRMLRRFILSLNLFRFLVNSNNPTRY 379


>04_01_0254 + 3388215-3388553,3388869-3390830
          Length = 766

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +1

Query: 82  WDASDRVSAPKSWRWFTISQTGIWLL*RPFPSVLNL*KISRKSHSP*RWCQLLNT 246
           W  S     P+SW    +  +G W + R F   LNL +    +  P R+   L T
Sbjct: 326 WTYSYLNDRPRSWLHHALLCSGKWRMLRRFILSLNLFRFLANNKKPTRYRMWLGT 380


>02_04_0552 - 23804154-23805326
          Length = 390

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -1

Query: 209 DFLDIFHRFKTDGNGLQSSHIPVWL-MVNHRHDLGADTRSEASQHFANFMGVYR*NLPVD 33
           D+LD  H  +       S  +  W+  + HR++L A T   A  +F  F+         +
Sbjct: 180 DYLDTVHNGQISAASRAS--LVAWMGRLTHRYELAAGTLHRAVSYFDRFLSARALPSYTE 237

Query: 32  EKMSLV 15
            ++SLV
Sbjct: 238 HQLSLV 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,623,527
Number of Sequences: 37544
Number of extensions: 273612
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)