Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0321
(398 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 2e-24
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045) 29 1.8
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 29 1.8
SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05) 28 2.4
SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_5783| Best HMM Match : PIR (HMM E-Value=6.1) 28 3.2
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 27 5.6
SB_5668| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_12139| Best HMM Match : Autotransporter (HMM E-Value=1.4) 27 7.4
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_8905| Best HMM Match : FYVE (HMM E-Value=0.13) 26 9.8
>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 107 bits (258), Expect = 2e-24
Identities = 47/77 (61%), Positives = 62/77 (80%)
Frame = +3
Query: 168 ISIRLKSVKNIQKITQSMKMVSAAKYTRAERYLKAARPYGEGAVQFYERAEVTPPEDDPK 347
+S+RL+SVKNIQKIT+SMKMVSAAK+ RAE+ LK+AR YG+GA Y++ E+ +DPK
Sbjct: 62 VSLRLRSVKNIQKITKSMKMVSAAKFGRAEKELKSARAYGDGATALYDKVEIKQESEDPK 121
Query: 348 QLFVAMTSDRGLCGAVH 398
L V ++SDRGLCG +H
Sbjct: 122 HLIVVLSSDRGLCGGIH 138
>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
Length = 1050
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 230 HHLHGLCDFLDIFHRFKTDGNGLQSSHIPVWL 135
+H+ C+ + F+R + G G H+ VWL
Sbjct: 595 NHIRNRCNVENFFYRIEFQGRGTAHVHLLVWL 626
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +3
Query: 156 TLKAISIRLKSVKNIQK----ITQSMKMVSAAKYTRAERYLK-AARPYGEGAVQFYERAE 320
T+K+I + K+IQK IT+ +K++S+ + ++Y K A+ + +V Y RA+
Sbjct: 78 TIKSIELARNLTKDIQKMTKEITRKIKLMSSQAMEKVDKYTKPLAKLIVKVSVSIYNRAK 137
>SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05)
Length = 662
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 21 GHFFVDW*ILPINTHKICKMLGRFGPGVGTQVVAVVYHQPNRNMA 155
G+FFV+ +LP+ K + F G G +V VY+ ++A
Sbjct: 112 GYFFVEAGLLPLTAFYSEKTVFAFSGGTGFGLVGTVYYTGKHSLA 156
>SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 312 RAEVTPPEDDPKQLFVAMTSDRGLCG 389
RA TPPE K + + S GLCG
Sbjct: 263 RARATPPEVTDKMAILRLPSGLGLCG 288
>SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)
Length = 215
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 77 NVGTLRTGCRHPSRGGGLP 133
N+ TL TG R P GGG+P
Sbjct: 26 NLNTLPTGARQPVPGGGVP 44
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -3
Query: 360 QQTIAWGHLREV*PQPFHRTVLHLHHRD---EQLSGNAQHGC 244
Q + WG LR + P+ F +LH H D +Q N H C
Sbjct: 874 QDCVLWG-LRVIIPEAFQEKILHDLHADHPLDQAIENMVHHC 914
>SB_5668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 86 TLRTGCRHPSRGGGLPSAKQEYGYFEGHFH 175
T T HPS+G G E GY +G H
Sbjct: 20 TQSTCAPHPSKGVGCTGVADEGGYLKGQCH 49
>SB_12139| Best HMM Match : Autotransporter (HMM E-Value=1.4)
Length = 751
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Frame = -3
Query: 126 PPPRLGCRH--PVRSVPTF 76
PP R GCRH P RS P+F
Sbjct: 351 PPSRRGCRHSRPGRSSPSF 369
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 26.2 bits (55), Expect = 9.8
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = +3
Query: 108 TQVVAVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERYLKAARP 281
TQ V Q N ATL I+ +LKS + IT S ++ L + P
Sbjct: 2754 TQATTTVSKQRRINEATLTTIAAKLKSTLHSSTITPSSNSSETLSFSIKAAILSHSTP 2811
>SB_8905| Best HMM Match : FYVE (HMM E-Value=0.13)
Length = 687
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 397 CTAPHKPLSEVIATNNCLGSSS 332
C KP+ EV +N+C+ +SS
Sbjct: 106 CDPQRKPIKEVTTSNSCVSTSS 127
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,184,486
Number of Sequences: 59808
Number of extensions: 304934
Number of successful extensions: 711
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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