Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0321
(398 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical ... 105 1e-23
AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical ... 105 1e-23
AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical ... 105 1e-23
U64848-14|AAB04890.1| 382|Caenorhabditis elegans Hypothetical p... 29 1.6
Z75543-1|CAA99867.1| 314|Caenorhabditis elegans Hypothetical pr... 28 2.1
AC024804-3|AAF60750.1| 130|Caenorhabditis elegans Hypothetical ... 28 2.1
U41557-1|AAA83300.1| 418|Caenorhabditis elegans Hypothetical pr... 27 3.7
U88167-10|AAB42222.1| 804|Caenorhabditis elegans Hypothetical p... 27 5.0
U88167-9|AAK68288.1| 890|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical pr... 27 6.5
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 27 6.5
AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein. 27 6.5
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 26 8.7
>AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18c protein.
Length = 200
Score = 105 bits (252), Expect = 1e-23
Identities = 55/89 (61%), Positives = 64/89 (71%), Gaps = 4/89 (4%)
Frame = +3
Query: 144 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERYLKAARPYGEGAVQFYER--- 314
R ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER LK AR YG GA F++
Sbjct: 23 RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNIDP 82
Query: 315 -AEVTPPEDDPKQLFVAMTSDRGLCGAVH 398
E ++ KQ+ V +TSDRGLCG VH
Sbjct: 83 VVEGVEKQESKKQVLVLITSDRGLCGGVH 111
>AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18a protein.
Length = 299
Score = 105 bits (252), Expect = 1e-23
Identities = 55/89 (61%), Positives = 64/89 (71%), Gaps = 4/89 (4%)
Frame = +3
Query: 144 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERYLKAARPYGEGAVQFYER--- 314
R ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER LK AR YG GA F++
Sbjct: 23 RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNIDP 82
Query: 315 -AEVTPPEDDPKQLFVAMTSDRGLCGAVH 398
E ++ KQ+ V +TSDRGLCG VH
Sbjct: 83 VVEGVEKQESKKQVLVLITSDRGLCGGVH 111
>AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18b protein.
Length = 313
Score = 105 bits (252), Expect = 1e-23
Identities = 55/89 (61%), Positives = 64/89 (71%), Gaps = 4/89 (4%)
Frame = +3
Query: 144 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERYLKAARPYGEGAVQFYER--- 314
R ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER LK AR YG GA F++
Sbjct: 23 RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNIDP 82
Query: 315 -AEVTPPEDDPKQLFVAMTSDRGLCGAVH 398
E ++ KQ+ V +TSDRGLCG VH
Sbjct: 83 VVEGVEKQESKKQVLVLITSDRGLCGGVH 111
>U64848-14|AAB04890.1| 382|Caenorhabditis elegans Hypothetical
protein C50E3.12 protein.
Length = 382
Score = 28.7 bits (61), Expect = 1.6
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +3
Query: 177 RLKSVKNIQKITQSMKMVSAAKYTRAERYLKAARPYGEGAVQFYERAEVTPPEDDPKQLF 356
R + +++Q+I Q ++ ++A + +RY +A P R + P +DP+ L
Sbjct: 263 RTRISRDLQQIEQEVREIAAPQAVANQRYRRANAPDNL-------RRDQPSPAEDPEGLG 315
Query: 357 VAMTSDRG 380
MT D G
Sbjct: 316 ALMTPDEG 323
>Z75543-1|CAA99867.1| 314|Caenorhabditis elegans Hypothetical
protein K01D12.1 protein.
Length = 314
Score = 28.3 bits (60), Expect = 2.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 99 PVRSVPTFCKFYGCLSVKFTSRRKN 25
PV PTF FY C+ K S R N
Sbjct: 52 PVEGTPTFKAFYNCVYPKLASLRGN 76
>AC024804-3|AAF60750.1| 130|Caenorhabditis elegans Hypothetical
protein Y51H7BR.7 protein.
Length = 130
Score = 28.3 bits (60), Expect = 2.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 6 GIRHEGHFFVDW*ILPINTHKICKMLGRFGPGVGT 110
G +H G F + I+P++ +C L PG+GT
Sbjct: 38 GYQHHGFFRAEIPIMPLSLAVLCCFLNMLIPGLGT 72
>U41557-1|AAA83300.1| 418|Caenorhabditis elegans Hypothetical
protein C50F7.6 protein.
Length = 418
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 126 VYHQPNRNMATLKAISIRLKSV-KNIQKITQSMKMVSAAKYTRAERYLKAAR 278
+ P+ LK S+R S+ +NIQ T+ K S K AE Y K R
Sbjct: 167 IIRAPSAVFGALKGSSLRKLSISRNIQMTTKVNKEESDRKEKEAEEYAKRFR 218
>U88167-10|AAB42222.1| 804|Caenorhabditis elegans Hypothetical
protein D2092.1a protein.
Length = 804
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 117 VAVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERYLK 269
V + PN L + I LKS++N QK +K K + E L+
Sbjct: 509 VTIYDEDPNNRFEFLGRVQIPLKSIRNCQKRWYGLKDEKLRKRVKGEVLLE 559
>U88167-9|AAK68288.1| 890|Caenorhabditis elegans Hypothetical
protein D2092.1b protein.
Length = 890
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 117 VAVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERYLK 269
V + PN L + I LKS++N QK +K K + E L+
Sbjct: 595 VTIYDEDPNNRFEFLGRVQIPLKSIRNCQKRWYGLKDEKLRKRVKGEVLLE 645
>Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical
protein F45G2.6 protein.
Length = 462
Score = 26.6 bits (56), Expect = 6.5
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -1
Query: 323 NLSPFIELYCTFTIGTSSFQVTLSTGVFSS*HHLHGLCD 207
N+ PF+ CTF G S Q LS HL LCD
Sbjct: 189 NVCPFVPYGCTFAGGKESIQQHLSD---EPVRHLMYLCD 224
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 276 RPYGEGAVQFYERAEVTPP 332
RP+GEGA + E A+VT P
Sbjct: 1366 RPFGEGAERRTEEADVTTP 1384
>AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein.
Length = 462
Score = 26.6 bits (56), Expect = 6.5
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -1
Query: 323 NLSPFIELYCTFTIGTSSFQVTLSTGVFSS*HHLHGLCD 207
N+ PF+ CTF G S Q LS HL LCD
Sbjct: 189 NVCPFVPYGCTFAGGKESIQQHLSD---EPVRHLMYLCD 224
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 126 PPPRLGCRHPVRSVPTFCKFYG 61
PPP+ GC RS+P F+G
Sbjct: 71 PPPQCGCGRKKRSLPEKPTFFG 92
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,392,500
Number of Sequences: 27780
Number of extensions: 220577
Number of successful extensions: 545
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -