Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0321
         (398 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   0.97 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   0.97 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   6.9  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 0.97
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 89  LRTGCRHPSRGGGLPSAKQ 145
           L + C  PSRG  +PS+++
Sbjct: 12  LLSSCTRPSRGNAVPSSQR 30


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 0.97
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 89  LRTGCRHPSRGGGLPSAKQ 145
           L + C  PSRG  +PS+++
Sbjct: 12  LLSSCTRPSRGNAVPSSQR 30


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 67  LWVFIGKIYQSTKKCP 20
           LW F+ K+ Q  + CP
Sbjct: 460 LWEFLLKLLQDREYCP 475



 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +2

Query: 107 HPSRGGGLPSAKQEYGYFEGHFHP 178
           +PS  G LP +   + +    +HP
Sbjct: 305 YPSTAGFLPPSYHPHQHHPSQYHP 328


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 167 GLQSSHIPVWLMVNH 123
           G   +++P W+M NH
Sbjct: 346 GTPQNNVPNWVMGNH 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,860
Number of Sequences: 438
Number of extensions: 3001
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)