Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0321
         (398 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast...    55   2e-08
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial...    53   8e-08
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast...    46   9e-06
At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associate...    27   6.1  
At5g08730.1 68418.m01037 IBR domain-containing protein contains ...    26   8.0  
At1g29080.1 68414.m03560 peptidase C1A papain family protein con...    26   8.0  

>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
           (ATPC1) identical to SP|Q01908 ATP synthase gamma chain
           1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}
          Length = 373

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
 Frame = +3

Query: 153 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERYLKAARPYGEGAVQFYERAEVTPP 332
           A+L+ +  R+ SVKN QKIT++MK+V+AAK  RA+  +   RP+ E  V+          
Sbjct: 51  ASLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQ 110

Query: 333 EDD-----------PKQLFVAMTSDRGLCG 389
            DD            K   V +T DRGLCG
Sbjct: 111 TDDVDVPLTKVRPVKKVALVVVTGDRGLCG 140


>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
           (ATPC) identical to SP|Q96250 ATP synthase gamma chain,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; contains Pfam profile: PF00231 ATP synthase
          Length = 325

 Score = 52.8 bits (121), Expect = 8e-08
 Identities = 31/85 (36%), Positives = 51/85 (60%)
 Frame = +3

Query: 144 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERYLKAARPYGEGAVQFYERAEV 323
           R+++T + +  R+KSVKNIQKIT++MKMV+A+K    +   + +R   +    F      
Sbjct: 41  RSIST-QVVRNRMKSVKNIQKITKAMKMVAASKLRAVQGRAENSRGLWQ---PFTALLGD 96

Query: 324 TPPEDDPKQLFVAMTSDRGLCGAVH 398
            P  D  K + V ++SD+GLCG ++
Sbjct: 97  NPSIDVKKSVVVTLSSDKGLCGGIN 121


>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
           (ATPC2) identical to SP|Q01909 ATP synthase gamma chain
           2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; contains Pfam profile: PF00231 ATP synthase;
           similar to ATP synthase gamma-subunit GI:21241 from
           [Spinacia oleracea]
          Length = 386

 Score = 46.0 bits (104), Expect = 9e-06
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 11/90 (12%)
 Frame = +3

Query: 153 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERYLKAARPYGEGAVQ-FYERAEVTP 329
           A ++ +  R+ SVKN QKIT++M++V+AA+  RA+  +   RP+ E  V+  Y   +   
Sbjct: 61  AGIRELRERIDSVKNTQKITEAMRLVAAARVRRAQDAVIKGRPFTETLVEILYSINQSAQ 120

Query: 330 PEDDPKQL----------FVAMTSDRGLCG 389
            ED    L           V +T D+GLCG
Sbjct: 121 LEDIDFPLSIVRPVKRVALVVVTGDKGLCG 150


>At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associated
           receptor kinase 1 (BAK1) / somatic embryogenesis
           receptor-like kinase 3 (SERK3) identical to SP|Q94F62
           BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase
           1 precursor (EC 2.7.1.37) (BRI1-associated receptor
           kinase 1) (Somatic embryogenesis receptor-like kinase 3)
           {Arabidopsis thaliana}; contains Pfam domains PF00560:
           Leucine Rich Repeat and PF00069: Protein kinase domain;
           identical to cDNA somatic embryogenesis receptor-like
           kinase 3 (SERK3) GI:14573458
          Length = 615

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 309 ERAEVTPPEDDPKQLFVAMTSDRGL 383
           ER E  PP D PK+  +A+ S RGL
Sbjct: 377 ERPESQPPLDWPKRQRIALGSARGL 401


>At5g08730.1 68418.m01037 IBR domain-containing protein contains
           similarity to Swiss-Prot:Q94981 ariadne-1 protein
           (Ari-1) [Drosophila melanogaster]
          Length = 500

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 55  IGKIYQSTKKCPSCRIP 5
           I  I+ +TK CP C+IP
Sbjct: 231 ISWIHTNTKSCPKCKIP 247


>At1g29080.1 68414.m03560 peptidase C1A papain family protein
           contains similarity to cysteine protease SPCP1
           GI:13491750 from [Ipomoea batatas]; contains Pfam
           profile PF00112: Papain family cysteine protease
          Length = 346

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 232 DTIFMDCVIFWIFFTDLRRMEMAFKVAIF 146
           D +   CV+  IFF DL+  E   +VA++
Sbjct: 2   DFVEFVCVVLTIFFMDLKISEATSRVALY 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,864,181
Number of Sequences: 28952
Number of extensions: 210232
Number of successful extensions: 501
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)