Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0320
(625 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32619| Best HMM Match : FCH (HMM E-Value=7.1e-23) 125 3e-29
SB_18820| Best HMM Match : FCH (HMM E-Value=5.4e-20) 116 2e-26
SB_28629| Best HMM Match : FCH (HMM E-Value=5.2e-06) 113 1e-25
SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4) 35 0.062
SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0) 33 0.19
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2) 31 0.76
SB_52289| Best HMM Match : SH3_1 (HMM E-Value=3.5e-13) 31 0.76
SB_16340| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_1789| Best HMM Match : RICH (HMM E-Value=1.6) 30 1.3
SB_52266| Best HMM Match : DUF1665 (HMM E-Value=1.3) 30 1.8
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094) 29 2.3
SB_4107| Best HMM Match : M (HMM E-Value=8e-22) 29 2.3
SB_58317| Best HMM Match : rve (HMM E-Value=0.00053) 29 2.3
SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5) 29 3.1
SB_28257| Best HMM Match : Gp-FAR-1 (HMM E-Value=3.2) 29 4.1
SB_19263| Best HMM Match : TAP42 (HMM E-Value=0.25) 29 4.1
SB_57710| Best HMM Match : bZIP_1 (HMM E-Value=0.32) 28 5.4
SB_34086| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_52107| Best HMM Match : DUF833 (HMM E-Value=1.6e-09) 27 9.4
SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15) 27 9.4
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14) 27 9.4
SB_20969| Best HMM Match : DUF164 (HMM E-Value=0.6) 27 9.4
SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30) 27 9.4
SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_32619| Best HMM Match : FCH (HMM E-Value=7.1e-23)
Length = 334
Score = 125 bits (302), Expect = 3e-29
Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 1/163 (0%)
Frame = +2
Query: 2 AQKPWSKLLQKVERARLEYHTACKQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDE 181
AQ+PW+K V +++ Y+ AC+ A+ N+S ++ DQ+KK +++ K E
Sbjct: 173 AQRPWAKRYDDVLKSKKAYYAACRARDQAEKLY-NSSDPNTIKEDQIKKTKEKLMKSERE 231
Query: 182 VSKNREKYQTALAEITAYNPRYIEDMTSVFDRCQQMEAQRLKFFKDVLFSFHKCLNISQE 361
VS ++KY+ A+ +IT YNP+Y EDM VFD+ Q E +R FFK + LN+ Q
Sbjct: 232 VSTTQDKYKEAVRDITNYNPKYKEDMCFVFDKLQAFEGERKAFFKQTMQGLCNALNVQQY 291
Query: 362 -PSLPQIYEEFHHTINNADSQKDLKWWANNHGVNMAMAWPQFE 487
QIY E + + DL WWA+ +G +M + WP++E
Sbjct: 292 FERFTQIYNELSNKFEKTEPTADLGWWASTYGTDMPIKWPEYE 334
>SB_18820| Best HMM Match : FCH (HMM E-Value=5.4e-20)
Length = 477
Score = 116 bits (278), Expect = 2e-26
Identities = 53/123 (43%), Positives = 73/123 (59%)
Frame = +2
Query: 2 AQKPWSKLLQKVERARLEYHTACKQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDE 181
AQKPW+KLL KV R+R YH A K A+ + AS D + ++ KK+ D V K R +
Sbjct: 143 AQKPWAKLLMKVMRSRKAYHNAAKATEQAKKLQIEASSDPNVPQEKFKKLTDAVEKARRD 202
Query: 182 VSKNREKYQTALAEITAYNPRYIEDMTSVFDRCQQMEAQRLKFFKDVLFSFHKCLNISQE 361
+ K +KY L I+ NPRY DMT F+RCQ E +R FFKD L +H CL++S++
Sbjct: 203 MQKCEDKYNDRLENISKDNPRYERDMTEQFERCQAFEQKRKDFFKDALMKYHSCLDVSRK 262
Query: 362 PSL 370
+
Sbjct: 263 SEI 265
>SB_28629| Best HMM Match : FCH (HMM E-Value=5.2e-06)
Length = 317
Score = 113 bits (272), Expect = 1e-25
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Frame = +2
Query: 32 KVERARLEYHTACKQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDEVSKNREKYQT 211
+V +++ Y+ AC+ A+ N+S ++ DQ+KK +++ K EVS ++KY+
Sbjct: 93 QVLKSKKAYYAACRARDQAEKLY-NSSDPNTIKEDQIKKTKEKLMKSEREVSTTQDKYKE 151
Query: 212 ALAEITAYNPRYIEDMTSVFDRCQQMEAQRLKFFKDVLFSFHKCLNISQE-PSLPQIYEE 388
A+ +IT YNP+Y EDM VFD+ Q E +R FFK + LN+ Q QIY E
Sbjct: 152 AVRDITNYNPKYKEDMCFVFDKLQAFEGERKAFFKQTMQGLCNALNVQQYFERFTQIYNE 211
Query: 389 FHHTINNADSQKDLKWWANNHGVNMAMAWPQFE 487
+ + DL WWA+ +G +M + WP++E
Sbjct: 212 LSNKFEKTEPTADLGWWASTYGTDMPIKWPEYE 244
>SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)
Length = 311
Score = 34.7 bits (76), Expect = 0.062
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Frame = +2
Query: 65 ACKQERTAQNQER-NASGDS---SFSPDQVKKMADRVSKCRDEVSKNREKYQTALAEITA 232
AC+QER N+ER A+ D+ + ++V K +RV+K R+ V+K R++ +
Sbjct: 161 ACEQERERLNKERKRANKDTERVNKETERVNKETERVNKERERVNKERKRANKETERVNK 220
Query: 233 YNPRYIEDMTSVFDRCQQM--EAQRLKFFKDVLFSFHKCLN 349
R ++ V + +++ E ++L K+ L K LN
Sbjct: 221 ETERVNKERERVNKKKERLNKEKEQLNKEKEQLNKERKRLN 261
>SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 587
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/89 (23%), Positives = 38/89 (42%)
Frame = +2
Query: 134 DQVKKMADRVSKCRDEVSKNREKYQTALAEITAYNPRYIEDMTSVFDRCQQMEAQRLKFF 313
+Q KK R SKC D++ +E + + E + VF++C ++A L
Sbjct: 238 EQTKKTF-RCSKCSDQIQGKKEYLEHRKSHPIERKIHKCEVCSRVFNKCSNLKAHALSHS 296
Query: 314 KDVLFSFHKCLNISQEPSLPQIYEEFHHT 400
+ ++ KC Q S I+ H++
Sbjct: 297 HERPYACDKCDKTFQRTSQLVIHNRIHNS 325
>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
Length = 878
Score = 31.1 bits (67), Expect = 0.76
Identities = 20/70 (28%), Positives = 39/70 (55%)
Frame = +2
Query: 5 QKPWSKLLQKVERARLEYHTACKQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDEV 184
+KP ++ ++V AR Y TA K + AQ +E+ + F ++VK+M + ++ ++
Sbjct: 636 KKPVVQVPKRVTEARKAYETARKLVKAAQAREQLYKAEQDFF-EKVKEMMSK-TEVKEPG 693
Query: 185 SKNREKYQTA 214
KN+ +TA
Sbjct: 694 QKNQNADETA 703
>SB_52289| Best HMM Match : SH3_1 (HMM E-Value=3.5e-13)
Length = 803
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/96 (16%), Positives = 47/96 (48%)
Frame = +2
Query: 146 KMADRVSKCRDEVSKNREKYQTALAEITAYNPRYIEDMTSVFDRCQQMEAQRLKFFKDVL 325
++ ++ KC+ V + YQT++ + + +M + + Q +E +R+ F ++ +
Sbjct: 167 QLRSKLGKCKTAVEQADSAYQTSVRVLDDTRVVWEREMATCCNVFQNLEEERIAFLRNWM 226
Query: 326 FSFHKCLNISQEPSLPQIYEEFHHTINNADSQKDLK 433
+ + +I+ + ++YE ++ + +D+K
Sbjct: 227 WLYANLGSINC-VKVDEMYEVVRQSLEGCNVDQDIK 261
>SB_16340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/83 (22%), Positives = 40/83 (48%)
Frame = +2
Query: 71 KQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDEVSKNREKYQTALAEITAYNPRYI 250
K TA Q++ + + +++ ++V K DE+ + RE+++ AL +T
Sbjct: 146 KNITTAMEQQKRLKDSYDETVKRNQELEEQVLKMADEMQEERERFEEALKVVT------- 198
Query: 251 EDMTSVFDRCQQMEAQRLKFFKD 319
E + ++ +ME + +K KD
Sbjct: 199 ERLVETREKMNKMETETVKNRKD 221
>SB_1789| Best HMM Match : RICH (HMM E-Value=1.6)
Length = 254
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/122 (20%), Positives = 62/122 (50%)
Frame = +2
Query: 71 KQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDEVSKNREKYQTALAEITAYNPRYI 250
+++RT + +R + F+ Q K+M ++ +K R + K ++Y+ A+ ++ + I
Sbjct: 73 EKKRTNELLQRALNQQREFTLRQAKEM-EKDAKQRLTIQK--QEYEAAIQRHLSFIDQLI 129
Query: 251 EDMTSVFDRCQQMEAQRLKFFKDVLFSFHKCLNISQEPSLPQIYEEFHHTINNADSQKDL 430
+D ++ +RC+++ +K KD+ + + + +E +I ++ I A+ +
Sbjct: 130 DDKKTLGERCEEL----VKKLKDIDKKYSDKIKLMEENHQVEIKKQ-KEVILAAEKLRRE 184
Query: 431 KW 436
KW
Sbjct: 185 KW 186
>SB_52266| Best HMM Match : DUF1665 (HMM E-Value=1.3)
Length = 697
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 29 QKVERARLEYHTACKQERTAQNQERNASGDSSFSPD-QVKKMADRVSKCRDEVSKNREKY 205
Q+++R A ++ QE +GD + PD + KK+A ++ D + R++
Sbjct: 366 QEIQRRMAGIRGAIQEAPEKPKQEVKVAGDPRYDPDARQKKIAALKAQAEDRAAMLRKQL 425
Query: 206 QTALAEITA 232
+ AE+ A
Sbjct: 426 EARKAEVLA 434
>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3038
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -2
Query: 411 ALLIVWWNSS*ICGKLGS*LMLRHLWKLNSTSLKNFNRCASICWHL---SNTEVMSSMYR 241
AL +WW +S + G+L M++HL+ S S N C L +N EV ++ R
Sbjct: 1031 ALRFLWWPNSDLSGELEEYRMVKHLFGATS-SPSVVNYCLKKTIELKDNTNPEVSDAIVR 1089
Query: 240 GLY 232
+Y
Sbjct: 1090 NMY 1092
>SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094)
Length = 332
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/100 (22%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Frame = +2
Query: 71 KQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDEVSKNREKYQTALAEITAYNPRYI 250
K ++ + +ER + D+VKK+ +R+ +E + E+ + ++TA +
Sbjct: 50 KLKQEIEQKEREINNLRKTRNDEVKKLKERIHVLEEEKKRLEEELASVKYKLTALESE-V 108
Query: 251 EDMTSVFDRCQ---QMEAQRLKFFKDVLFSFHKCLNISQE 361
+ +++ DR + Q A++L + + SF + L+ S+E
Sbjct: 109 KALSNANDRQEEEKQKLAEKLALVESKVQSFKEELDDSKE 148
>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
Length = 2039
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +2
Query: 5 QKPWSKLLQKVERARLEYHTACKQERTAQNQ----ERNASGDSSFSPDQVKKMADRVSKC 172
Q+ ++L+QK+++ L+Y C + ++ N+ E NA D +K+ R+ +
Sbjct: 62 QQRQAQLIQKLQQKVLQYKRKCGELESSMNEKTTAEENAKRQLQSLNDSLKEKEARLKET 121
Query: 173 RDEVSKNREKYQTALAE 223
+E S + E L E
Sbjct: 122 EEEHSSDLENALIRLEE 138
>SB_58317| Best HMM Match : rve (HMM E-Value=0.00053)
Length = 1002
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/71 (33%), Positives = 36/71 (50%)
Frame = +2
Query: 17 SKLLQKVERARLEYHTACKQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDEVSKNR 196
+K L K+E +T ER + ERN D + + D VK+M+ +EV K
Sbjct: 444 TKKLSKLEFCLRHPYTIALVERLGE-VERNV--DKALTHDDVKRMS------AEEVRKYE 494
Query: 197 EKYQTALAEIT 229
++Y+TALA T
Sbjct: 495 KRYETALASRT 505
>SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 600
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/69 (27%), Positives = 37/69 (53%)
Frame = +2
Query: 119 SSFSPDQVKKMADRVSKCRDEVSKNREKYQTALAEITAYNPRYIEDMTSVFDRCQQMEAQ 298
+S S +Q+K M D ++K RDE++ +++ + ITA+ R + S + ++ +A
Sbjct: 255 ASSSQEQIKAMKDLLAKARDEITSLKDEREKM---ITAHQNRIEQLRESFKKKMEEADAW 311
Query: 299 RLKFFKDVL 325
K K +L
Sbjct: 312 PDKLNKAIL 320
>SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1553
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +2
Query: 53 EYHTACKQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDEVSKNREKYQTALAEI 226
E H KQ R + N+ + S +++ + KCR++++ N+E+ Q+ E+
Sbjct: 1172 EIHEYDKQVRQLKADRSNSQYEMEKSRFYTEQLEADLKKCREQIAANQEQMQSLQQEL 1229
>SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5)
Length = 297
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +2
Query: 23 LLQKVERARLEYHTACKQERTAQNQERNASGDSSFSPDQ----VKKMADRVSKCRDEVSK 190
++ K+ + + EY A + + + ++SGDS P + K++ D V K E+SK
Sbjct: 62 VMAKLHKKKAEYEEAIGAKSENEEKSESSSGDSESPPPKPHVSAKELIDEVVK--QEMSK 119
Query: 191 NREKYQTALAEIT 229
+++K +E T
Sbjct: 120 HKKKNNDGDSEET 132
>SB_28257| Best HMM Match : Gp-FAR-1 (HMM E-Value=3.2)
Length = 497
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 62 TACKQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDEVSKNRE-KYQTALAE 223
T+ +Q ++ +N + + S QVK+ D+ + RDE +++ E K QT E
Sbjct: 140 TSIEQSDQLDSKSQNEASEKSGDARQVKRSVDKKASVRDEKNRHDEDKKQTEKEE 194
>SB_19263| Best HMM Match : TAP42 (HMM E-Value=0.25)
Length = 303
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +2
Query: 326 FSFHKCLNISQEPSLPQIYEEFHHTINNADSQKDLKWWANNHGVNMAMAWPQF 484
F H+ + S EPS +E + + N S + NHG+ + +P F
Sbjct: 20 FELHEKIETSDEPSSSDRVQELKNIMKNTSSSVTVDDENQNHGLVTLVIYPYF 72
>SB_57710| Best HMM Match : bZIP_1 (HMM E-Value=0.32)
Length = 584
Score = 28.3 bits (60), Expect = 5.4
Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 7/142 (4%)
Frame = +2
Query: 155 DRVSKCRDEVSKNREKYQTALAEITAYNPRYIEDMTSVFDRCQQMEAQRLKFFKDVLFSF 334
+++S R + N+ Y+ ALA + + RY D + Q++ + LK FK +F
Sbjct: 446 EQISTFRTVLKANKSTYEVALANLKS---RYENDKAVQAESVAQLK-RNLKAFKAEAATF 501
Query: 335 HKCLNISQ---EPSLPQIYEEFHHTINNADSQK----DLKWWANNHGVNMAMAWPQFEEY 493
++ E + Q+ +E + A+ +K L A + + + +FE
Sbjct: 502 ASLRSMFAARCEEYVVQL-DELQGKLMAAEEEKKTLNQLLKQAIHQKIALTQRLEEFEIA 560
Query: 494 TEEFRDIAKGKSKESLPTGPIT 559
E R + KS+ + P P+T
Sbjct: 561 RERLRAYTRRKSRSAKPPKPVT 582
>SB_34086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 890
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +1
Query: 145 ENGRSCIEMSRRSVKEPRKIPDSSSRDHGVQPSIHRGHDFSIR*VPTDGSAAIEIL 312
E+GR +S S + P ++ +SSS D + RGH S PT ++ L
Sbjct: 545 EDGRGIFYISEHSDQTPGEMHESSSEDTKSEMQDVRGHSTSDEDFPTHSKLPLDEL 600
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = +2
Query: 95 QERNASGDSSFSPDQVKKMADRVSKCRDEVSKNREKYQTALAEITAYNPRYIEDM 259
+ER S + D++K + +R RD++S+ + + ++E T+YN + ++DM
Sbjct: 2922 RERCNSESRTDLSDRLKFLDNRWHSVRDQISEKVQAAEAEISEWTSYN-QQLDDM 2975
>SB_52107| Best HMM Match : DUF833 (HMM E-Value=1.6e-09)
Length = 624
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 145 ENGRSCIEMSR-RSVKEPRKIPDSSSRDHGVQPSIHRGHDFS 267
EN RS I + R+ PR D+ S H +P++H DF+
Sbjct: 429 ENERSRIAGNEPRNANTPRSFQDNVSSSHFSKPTLHSYADFN 470
>SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15)
Length = 1001
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +2
Query: 26 LQKVERARLEYHTACKQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDEVSKNREKY 205
L+KV+ A+ E+ +++ + + S + S D K A + + +DEV+KN+++
Sbjct: 729 LKKVQAAKKEHAQLIREKANNDMRLKQLSNEVS---DMKKTKARLMKQMKDEVAKNKQRE 785
Query: 206 QTALAEI 226
EI
Sbjct: 786 SARNKEI 792
>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
Length = 1089
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 143 KKMADRVSKCRDEVSKNREKYQTALAEITAYNPR 244
K+ DR S CRD + K R++ + L + PR
Sbjct: 323 KRKLDRWSDCRDRLDKLRDRAKEKLDRVRTDGPR 356
>SB_20969| Best HMM Match : DUF164 (HMM E-Value=0.6)
Length = 478
Score = 27.5 bits (58), Expect = 9.4
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Frame = +2
Query: 8 KPWSKLLQKVERARLEYHTACK---------QERTAQNQERNASGDSSFSPDQVKKMADR 160
K W L ++++RLEY K Q++ AQ ER+ SF + K D+
Sbjct: 26 KLWETKLDAIQKSRLEYRENAKKLMLDNDVLQQQMAQT-ERDTLEVISFLKQEDIKKDDQ 84
Query: 161 VSKCRDEVSKNREKYQTALAEIT 229
V DE S+ + Q ALAE T
Sbjct: 85 V----DEYSQQIHQLQEALAEKT 103
>SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)
Length = 508
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 302 LKFFKDVLFSFHKCLNISQEPSLPQ-IYEEFHHTINNADSQKDLKWWAN 445
LK DV +F + LN EPS+P+ +Y F H KW+ +
Sbjct: 226 LKADDDVYVNFPRLLNWLHEPSIPEKLYAGFVHHRAFIHRNPSSKWYVS 274
>SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 143 KKMADRVSKCRDEVSKNREKYQTALAEITAYNPR 244
K+ DR S CRD + K R++ + L + PR
Sbjct: 22 KRKLDRWSDCRDRLDKLRDRAKEKLDRVRTDGPR 55
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,832,546
Number of Sequences: 59808
Number of extensions: 403177
Number of successful extensions: 1624
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1614
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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