Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0320
         (625 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    26   1.1  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   3.4  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           23   6.0  
AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding pr...    23   6.0  
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          23   7.9  
CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.          23   7.9  
AF457559-1|AAL68789.1|   92|Anopheles gambiae hypothetical prote...    23   7.9  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = -2

Query: 312 KNFNRCASICWHLSNTEVMSSMYRGLYAVISARAVWYFSRFFDTSSR 172
           K  +RC ++  ++ N +  +++   +Y   + RAV +FSR FD S++
Sbjct: 59  KLLSRCDNVISYIKNGKDSATIRISIYRN-NERAVRWFSRSFDHSAK 104



 Score = 25.8 bits (54), Expect = 1.1
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +2

Query: 41  RARLEYHTACKQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDEVSKNREKYQTALA 220
           +  +E   A K+E      ++ A G  S   D++  + ++  +  D +SK + +   ALA
Sbjct: 265 KQEMEAILARKKELETSKAKQVAIGQRS--TDEINSLEEKTERLEDTISKQKRELMDALA 322

Query: 221 E 223
           +
Sbjct: 323 K 323


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 22/73 (30%), Positives = 30/73 (41%)
 Frame = +2

Query: 131  PDQVKKMADRVSKCRDEVSKNREKYQTALAEITAYNPRYIEDMTSVFDRCQQMEAQRLKF 310
            PDQ+KK  D ++K         EK QT   +      R  E + S     ++ EA R K 
Sbjct: 996  PDQIKKSGDSLAKELQSKLDTLEKIQTPNMKAMQKLDRVTEKIQST---NEEFEAARKK- 1051

Query: 311  FKDVLFSFHKCLN 349
             K    +F K  N
Sbjct: 1052 AKKAKAAFEKVKN 1064


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 27  FRRLNAPG*STTRLANKKEQRR 92
           F R+N PG S T+ A + E+R+
Sbjct: 917 FERVNDPGRSITKAAIRLEERQ 938


>AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding
           protein OBPjj5a protein.
          Length = 272

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 233 YNPRYIEDMTSVFDRCQQMEAQRLKFFKDVLFSFHKCLNISQEPSLPQ 376
           Y   Y E +    D C    AQR +F +   F+  +C+NI     LP+
Sbjct: 103 YGEAYQEAIGKAVDACL---AQRDEFREQEKFTKSECVNIRNNFHLPK 147


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 506 GTPRCTPRTAARPSP 462
           GT + TP TAA P P
Sbjct: 23  GTTQSTPATAAAPQP 37


>CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.
          Length = 295

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 506 GTPRCTPRTAARPSP 462
           GT + TP TAA P P
Sbjct: 23  GTTQSTPATAAAPQP 37


>AF457559-1|AAL68789.1|   92|Anopheles gambiae hypothetical protein
           12 protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +2

Query: 50  LEYHTACKQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDEV 184
           +E  TAC+QE TA + + + S     +   +++     S C   +
Sbjct: 47  VEDFTACRQEATANDPQHDRSDSIQRAKVDLQQQLVNYSYCTKNI 91


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 637,055
Number of Sequences: 2352
Number of extensions: 12861
Number of successful extensions: 35
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 60632475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)