Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0320
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               29   0.049
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.2  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 28.7 bits (61), Expect = 0.049
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 166 EMSRRSVKEPRKIPDSSSRDHGVQPSIHRGHDFSIR*VPTDGSAA 300
           E    ++K  ++ P+SSS D     SIH+   FS+    TDG  A
Sbjct: 92  ESDNENIKSQKEFPNSSSSDDERPNSIHQRASFSLN---TDGDIA 133


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 39   NAPG*STTRLANKKEQRRIRKETPAETALLVQIK 140
            N  G S  + AN K+Q   +   P +T L  QIK
Sbjct: 993  NQAGKSILQTANIKQQSPQQHVLPGKTLLASQIK 1026


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 368 LPQIYEEFHHTINNADSQKDLK 433
           + QI E  HH  +N    +DLK
Sbjct: 15  IQQILESVHHCHHNGVVHRDLK 36


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 290 EAQRLKFFKDVLFSFHKCLNISQEPSLPQ 376
           E ++  ++KD++    K L +   P LP+
Sbjct: 335 EEEKADWWKDIMLLNEKTLAVPAPPVLPE 363


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 290 EAQRLKFFKDVLFSFHKCLNISQEPSLPQ 376
           E ++  ++KD++    K L +   P LP+
Sbjct: 335 EEEKADWWKDIMLLNEKTLAVPAPPVLPE 363


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 290 EAQRLKFFKDVLFSFHKCLNISQEPSLPQ 376
           E ++  ++KD++    K L +   P LP+
Sbjct: 335 EEEKADWWKDIMLLNEKTLAVPAPPVLPE 363


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/31 (19%), Positives = 17/31 (54%)
 Frame = +2

Query: 53  EYHTACKQERTAQNQERNASGDSSFSPDQVK 145
           ++H   +Q++  Q +++    +    PD++K
Sbjct: 158 DHHRPYQQQQQQQQRQQQRQEERRLRPDEIK 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,096
Number of Sequences: 438
Number of extensions: 3567
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)