Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0319
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0019 + 403078-404211                                             31   1.2  
12_01_0861 + 8153108-8153266,8154633-8155136                           29   2.7  
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130...    29   4.8  
08_01_1002 + 10171942-10172859,10173369-10173452                       28   8.4  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   8.4  

>09_01_0019 + 403078-404211
          Length = 377

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 367 GESGFDSGEGA*ETATTSKEGSRRANYPLPARGGSDEK*RYG 492
           G S  DSG GA ++A   K  SRR  +      GSD   R+G
Sbjct: 321 GASDGDSGSGASDSADDRKRSSRRRRHRKSESSGSDGDERHG 362


>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -1

Query: 491 PYRYFSSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVVAE 336
           P    SS  P    G   RL  S  +VA+ + P P S+P  D P   TT+ + E
Sbjct: 94  PRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVALIE 147


>03_01_0161 +
           1307206-1307769,1307979-1308101,1308182-1308286,
           1308688-1308867,1308988-1309050,1309151-1309345,
           1309704-1309805,1309885-1309947,1310045-1310113,
           1310215-1310270,1310587-1310755
          Length = 562

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 24/86 (27%), Positives = 36/86 (41%)
 Frame = -1

Query: 476 SSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES**GRHLKD 297
           SS PP   S   +RL  +      S AP P  +  +P P +  V ++  I S  G +L  
Sbjct: 6   SSKPPTPASTPSSRLAAAPSSRVSSAAPHPSPSSSAPTPASRTVYSDRFIPSRAGSNL-- 63

Query: 296 ASPVLDHAICKSYPDSSKLTTSDARP 219
              + D A   S+ D++    S   P
Sbjct: 64  --ALFDLAPSPSHHDAAAAAASPGAP 87


>08_01_1002 + 10171942-10172859,10173369-10173452
          Length = 333

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = +2

Query: 218 RASRPKSLILMN--LDNFCRSHGQVPATHLSNVCLINF--RW*FLRLPWL-SRVTGNQGS 382
           RA +  SL L    +DN CR  G++P  + +N+ +  F     FL   WL SRV   + S
Sbjct: 242 RAPKLHSLTLWTPAVDNGCRVAGELPLLNAANISVDAFLGTEDFLDTLWLVSRVKVLKFS 301

Query: 383 IPEREPEK 406
           + +RE  K
Sbjct: 302 VRDRENRK 309


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 621 RNNFSIRYWSWNYRGC 574
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,713,130
Number of Sequences: 37544
Number of extensions: 422619
Number of successful extensions: 1085
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)