Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0319
(707 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 9e-04
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.056
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2) 29 2.8
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5) 29 4.9
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 28 8.5
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -1
Query: 419 DVVAVSQAPSPESNPDSPLPVTTM 348
DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 41.1 bits (92), Expect = 9e-04
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -1
Query: 410 AVSQAPSPESNPDSPLPVTTM 348
AVSQAPSPESNP+SP PV TM
Sbjct: 52 AVSQAPSPESNPNSPSPVVTM 72
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/59 (37%), Positives = 29/59 (49%)
Frame = +1
Query: 493 TLTRPRNRNEYTLNILTRNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 669
T + R ++++ R +WRASL Y K+VAVKKLVV F VG P
Sbjct: 44 TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 102
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 37.1 bits (82), Expect = 0.014
Identities = 20/42 (47%), Positives = 22/42 (52%)
Frame = +1
Query: 544 RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 669
R +WRASL Y K+VAVKKLVV F VG P
Sbjct: 14 RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 35.1 bits (77), Expect = 0.056
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -2
Query: 409 PFLRLPLRNRTLIPRYP 359
PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240
>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.69
Identities = 18/38 (47%), Positives = 19/38 (50%)
Frame = +1
Query: 556 RASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 669
RASL Y K+VAVKKLVV F VG P
Sbjct: 5 RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 42
>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +1
Query: 544 RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 669
R ASL Y K+VAVKKLVV F VG P
Sbjct: 24 RERRAASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 65
>SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)
Length = 111
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +1
Query: 604 YTKIVAVKKLVVAFVRRAVGAP 669
Y K+VAVKKLVV F VG P
Sbjct: 88 YIKVVAVKKLVVGFRDGTVGPP 109
>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +1
Query: 604 YTKIVAVKKLVVAFVRRAVGAP 669
Y K+VAVKKLVV F VG P
Sbjct: 89 YIKVVAVKKLVVGFRDGTVGPP 110
>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +1
Query: 604 YTKIVAVKKLVVAFVRRAVGAP 669
Y K+VAVKKLVV F VG P
Sbjct: 17 YIKVVAVKKLVVGFRDGTVGPP 38
>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
Length = 203
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -3
Query: 642 CNYELFNRNNFSIRYWSWNYRGCWH 568
C + RN +RYW W R C H
Sbjct: 91 CEVTVIARNILPVRYWIWLSRKCGH 115
>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -3
Query: 705 ICSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYW-SWNY 583
I S S R+RCT S + KC + + F W S+NY
Sbjct: 139 ISSGYYGRSYRLRCTSSTSWKCRLTSISESYFKGNNWFSYNY 180
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 428 PSLDVVAVSQAPSPESNPDSPLP 360
P+ DV+A Q P P S D PLP
Sbjct: 75 PAEDVMAAHQEPKPTSAIDQPLP 97
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,452,933
Number of Sequences: 59808
Number of extensions: 471151
Number of successful extensions: 1205
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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