Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0319
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.0  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   6.6  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   6.6  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   6.6  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   6.6  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   6.6  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 230 PKSLILMNLDNFCRSHGQVPAT 295
           P+ L  +NL + CR HG  PAT
Sbjct: 430 PRELEAVNLGSACRIHGS-PAT 450


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 39  MSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLT 173
           M  C P   DT    +Y+F   R Y +   T VI  +   + TLT
Sbjct: 230 MYACCP--NDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLT 272


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 418  SKEGSRRANYPLPARGGSDEK*RYG 492
            +K  S+ AN P PA GG   + + G
Sbjct: 1014 AKPQSQEANKPKPATGGKGTRPKRG 1038


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 681 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 583
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 681 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 583
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 681 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 583
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 681 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 583
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 681 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 583
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,907
Number of Sequences: 438
Number of extensions: 4368
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)