Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0316
         (706 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55750 Cluster: PREDICTED: similar to CG11791-PA...    87   3e-16
UniRef50_UPI0000DB736A Cluster: PREDICTED: similar to CG11791-PA...    50   7e-05
UniRef50_Q60053 Cluster: Neopullulanase 1 precursor; n=2; Thermo...    36   0.73 
UniRef50_Q6NN45 Cluster: RE41058p; n=3; Drosophila melanogaster|...    35   2.2  
UniRef50_Q4RAI7 Cluster: Chromosome undetermined SCAF23595, whol...    33   5.2  

>UniRef50_UPI0000D55750 Cluster: PREDICTED: similar to CG11791-PA,
           isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to CG11791-PA, isoform A - Tribolium castaneum
          Length = 137

 Score = 87.4 bits (207), Expect = 3e-16
 Identities = 53/120 (44%), Positives = 64/120 (53%), Gaps = 14/120 (11%)
 Frame = +1

Query: 358 MVGNNGTMMAIRIVHSKLRKREEHSASVHPAEV-------------XXXXXXXXXXXXXF 498
           MVG+NGTM+AIR+V SKLRKREEHS SVHPA+V                          +
Sbjct: 1   MVGSNGTMIAIRLVRSKLRKREEHSNSVHPADVVLHQTTPAAATQTPTAPQALQPDPLAY 60

Query: 499 RXXXXXXXXXXXXXXXVYPHDQDNLMQPHGNERASF-RSLRKNIGGRWKRLVKKKPEQEV 675
           R               +Y +DQD L+Q    ER  F R  RKN+GGRW+RLVK+KP  EV
Sbjct: 61  RGQFLWQYPPPPPQPYMYNNDQDTLVQNLPTERPGFVRGFRKNLGGRWRRLVKRKPPTEV 120


>UniRef50_UPI0000DB736A Cluster: PREDICTED: similar to CG11791-PA,
           isoform A; n=1; Apis mellifera|Rep: PREDICTED: similar
           to CG11791-PA, isoform A - Apis mellifera
          Length = 160

 Score = 49.6 bits (113), Expect = 7e-05
 Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = +1

Query: 556 HDQDNLMQPHGNERASF-RSLRKNIGGRWKRLVKKKPEQE 672
           +DQD L+    ++R  F +  RKNIGGRW+RLVK+KPE E
Sbjct: 103 NDQDTLVHALPSDRPGFAKGFRKNIGGRWRRLVKRKPESE 142



 Score = 40.3 bits (90), Expect = 0.045
 Identities = 17/23 (73%), Positives = 21/23 (91%)
 Frame = +1

Query: 379 MMAIRIVHSKLRKREEHSASVHP 447
           M+AIR+V SKLRKRE+HS +VHP
Sbjct: 1   MIAIRLVRSKLRKREDHSNAVHP 23


>UniRef50_Q60053 Cluster: Neopullulanase 1 precursor; n=2;
           Thermoactinomyces vulgaris|Rep: Neopullulanase 1
           precursor - Thermoactinomyces vulgaris
          Length = 666

 Score = 36.3 bits (80), Expect = 0.73
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = -3

Query: 311 WITGKKFQSDSHNISKTQFNSLTAVSRSNVTMN 213
           WITGK +Q++S +IS TQF+S    +R+N   N
Sbjct: 456 WITGKDYQNNSASISTTQFDSWLRGTRANYPTN 488


>UniRef50_Q6NN45 Cluster: RE41058p; n=3; Drosophila
           melanogaster|Rep: RE41058p - Drosophila melanogaster
           (Fruit fly)
          Length = 228

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +1

Query: 589 NERASFRSLRKNIGGRWKRLVKKKPEQEVTRSRLSSS 699
           ++++SF+  RK   GR+KRLV +K E     SR+ ++
Sbjct: 183 SDKSSFKGFRKQFSGRFKRLVTRKVEHSSDTSRIEAA 219


>UniRef50_Q4RAI7 Cluster: Chromosome undetermined SCAF23595, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF23595,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 455

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 500 RNARGSGCGAGAAWSTSAGCTEAECSSLLRSLLWTMRIAIIVPLFPTI--VSKGP 342
           R   G+G G  AA   + GC + + S   R   W   +A+ VP+ PT+  + +GP
Sbjct: 392 REGGGAGGGGAAAHGEAPGCDQVQRSYWSRH-FWVDLLAVAVPMVPTVAWLCRGP 445


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,711,116
Number of Sequences: 1657284
Number of extensions: 10621053
Number of successful extensions: 30891
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30862
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)