Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0316
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_33603| Best HMM Match : PHD (HMM E-Value=0.00046)                   31   1.2  
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_3753| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_48420| Best HMM Match : SNARE (HMM E-Value=0.022)                   28   8.5  
SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)               28   8.5  
SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3142

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 703 CGLSSGGIV*LPVQASFSLVVSNDHRYSCEDCGNW-HARC 587
           C L + G V  P  A      SN     C++CG W HA+C
Sbjct: 199 CSLLNPGPVKYPCSACTKPTKSNQRAICCDECGQWTHAKC 238


>SB_33603| Best HMM Match : PHD (HMM E-Value=0.00046)
          Length = 396

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 703 CGLSSGGIV*LPVQASFSLVVSNDHRYSCEDCGNW-HARC 587
           C + + G V  P  A      SN     C++CG+W HA+C
Sbjct: 91  CSMMNPGPVKHPCGACGKPTKSNQKAICCDECGHWMHAKC 130


>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 703 CGLSSGGIV*LPVQASFSLVVSNDHRYSCEDCGNW-HARC 587
           C + + G V  P  A      SN     C++CG+W HA+C
Sbjct: 91  CSMMNPGPVKHPCGACGKPTKSNQKAICCDECGHWMHAKC 130


>SB_3753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 976

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 637 NDHRYSCEDCGNWHARC 587
           +D+RY CEDCG  ++ C
Sbjct: 704 SDYRYLCEDCGKPYSTC 720


>SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 39  GTSERFARHLPATLLDKILVTYRAAERSR 125
           G  ER  R  P   LDK++ + RAAE SR
Sbjct: 152 GGRERLLRERPVPSLDKVVESLRAAEISR 180


>SB_48420| Best HMM Match : SNARE (HMM E-Value=0.022)
          Length = 215

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 562 QDNLMQPHGNERASFRSLR--KNIGGRWKRLVKKKPEQEVTRSRLSSSH 702
           + NL   H +   + R+++  K+I G      KK P+Q VT +   SSH
Sbjct: 79  EKNLDHIHNDMAVANRNIKSMKSIWGTMTNYFKKAPKQTVTENENKSSH 127


>SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 839

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -2

Query: 423 LPLTQLAVDDAYC--HHSTVVPNHCFKRSVNA-RIIENTGLDHGQEVPIRQSQHF*NTVQ 253
           +P+ +LA    YC  HHST   N  FK      R   N   DH  +   +    + N V 
Sbjct: 146 IPVNKLA---EYCQIHHST--GNKSFKEEFMCIRTPGNFSWDHSLKEENKPKNRYQNIVA 200

Query: 252 FTHSRIAV 229
           + H+R+A+
Sbjct: 201 YDHTRVAI 208


>SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -2

Query: 351 KRSVNARIIENTGLDHGQEVPIRQS 277
           K  VNA I E+ GLD G  VPI +S
Sbjct: 477 KPCVNALIREDEGLDEGSTVPIVES 501


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,006,739
Number of Sequences: 59808
Number of extensions: 361813
Number of successful extensions: 1162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)