Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0316
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11970.1 68418.m01400 expressed protein                             29   3.0  
At4g32820.1 68417.m04668 expressed protein ; expression supporte...    29   4.0  
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t...    28   6.9  

>At5g11970.1 68418.m01400 expressed protein
          Length = 105

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 574 MQP-HGNERASFRSLRKNIGGRWKRLVKKKPEQEVTRSR 687
           +QP HGN+   FRS   + G R   +   K E+ + RS+
Sbjct: 17  IQPYHGNQGGDFRSYSASYGTRENNIYDVKKEKSIARSK 55


>At4g32820.1 68417.m04668 expressed protein ; expression supported
           by MPSS
          Length = 1817

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/64 (21%), Positives = 31/64 (48%)
 Frame = +1

Query: 253 LNCVLEML*LSDWNFLPVIQPSVFDYSCVNGPFETMVGNNGTMMAIRIVHSKLRKREEHS 432
           L+C + +L +S W F   +  S  +++C+    E ++     +  + + +  LR    HS
Sbjct: 126 LSCSMGLLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAVGDEVSCLSVANLILRHWPSHS 185

Query: 433 ASVH 444
            ++H
Sbjct: 186 RALH 189


>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
           RNA-binding protein GB:AAA86641 GI:1174153 from
           [Arabidopsis thaliana]
          Length = 314

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -3

Query: 182 CYRLIAHITVRRNAREDRVTRAFSCAIGD*NFIEKCGRQVPSKALA 45
           C R I    V +NA ED V   F  A G+   +   G QV S  +A
Sbjct: 223 CSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIA 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,620,656
Number of Sequences: 28952
Number of extensions: 239913
Number of successful extensions: 646
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)