Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0315
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    27   1.8  
SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom...    27   3.1  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    26   5.5  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   9.6  

>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +2

Query: 206 LLQCAQSSHSTEVLDKPNSCFSASALFLRAGDRLAVRNTGGDRHSLMQPEKSFIGLI 376
           L +CA+    + +LDK N C     +F  A    AV N    RH      K F  L+
Sbjct: 601 LQRCAEDLEYSNMLDKANECDDDIKIFYVAA--FAVSNFSNMRHKERSVRKVFSPLL 655


>SPAP11E10.01 |||ornithine cyclodeaminase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 330

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 243 FSTNQIPVSLHQLCSSELATDSPLGTPAEIDTL 341
           FS N++   L  LC+++ +  S L  PAE  TL
Sbjct: 273 FSPNEVIADLFDLCNNKHSGRSQLKNPAEAITL 305


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 448 PLQCPVSERILLQVLRRIFGVSQFNETYEAFLWL 347
           P Q P + + +  +L  I+  + FN T    LWL
Sbjct: 40  PKQNPTNSQKIRHILDEIYEKTPFNNTRRRILWL 73


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 149 DVISWVLHRTNPESDGRDTLLQCAQSSHSTEVLDKPNSC 265
           D+  W LH TN +S     +L C  + H+  V D    C
Sbjct: 375 DICVWDLHDTNYQSIVSPLMLTCT-NIHNKPVSDYEKEC 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,488,092
Number of Sequences: 5004
Number of extensions: 49211
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)