Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0315
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0624 - 8202783-8203140,8203242-8203594,8203697-8203872,820... 32 0.35
06_03_0151 + 17270688-17270698,17271149-17271281,17271548-172715... 31 0.61
04_01_0625 - 8222105-8222462,8222574-8222926,8223029-8223204,822... 31 1.1
10_08_0849 + 21040043-21040199,21040620-21040678,21040925-210424... 29 4.3
02_05_0815 - 31977721-31977813,31978078-31978482,31978843-31979349 29 4.3
01_06_0261 + 27978341-27978391,27978539-27978683,27978794-279788... 29 4.3
07_01_0690 + 5221957-5223951 28 5.7
01_01_0144 - 1316626-1316658,1317580-1318863 28 5.7
12_01_0611 - 5034481-5034709,5034863-5035020,5035231-5035475,503... 27 9.9
11_04_0110 - 13539059-13539751,13539857-13540383,13541925-135424... 27 9.9
05_03_0425 - 13808840-13809414,13809552-13809765,13810268-138113... 27 9.9
>04_01_0624 -
8202783-8203140,8203242-8203594,8203697-8203872,
8203993-8204230,8208308-8208748
Length = 521
Score = 32.3 bits (70), Expect = 0.35
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 495 KLKQLFIKRNFVSKWHRYNVRFPNGYYYRSCAG 397
+L + + +N V +W ++ R+ GY+ RSC G
Sbjct: 444 RLPSISVMQNDVLEWEKFMKRYSRGYFRRSCIG 476
>06_03_0151 + 17270688-17270698,17271149-17271281,17271548-17271589,
17271706-17271815,17271957-17272035,17272114-17272287,
17272386-17272466,17272761-17272988,17273067-17273402,
17273501-17273586,17273642-17273783,17274596-17274687,
17274770-17274904,17275142-17275304,17275393-17275482,
17275568-17275753,17276109-17276141,17276700-17276762,
17276839-17276901,17276983-17277042,17277258-17277410,
17277530-17277613,17278434-17278610,17278685-17278791,
17278858-17279071,17279158-17279261,17279926-17280061,
17280191-17280316,17280682-17280792,17280968-17281066,
17281367-17281633,17281707-17281822,17281853-17282084,
17282597-17282664,17282682-17282807,17282980-17283040
Length = 1495
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +2
Query: 155 ISWVLHRTNPESDGRDTLLQCAQS-SHSTEVLDKPNSCFSASALFLRAGDRLAVRNTGGD 331
IS VL +D + +L C + + + E+ + N+ ++ A RLA+ + G
Sbjct: 826 ISLVLENLALSTDDNEDILYCLKGWNQALEMAKQKNNQWALYAKAFLDRTRLALASKGEQ 885
Query: 332 RHSLMQPEKSFIG 370
++LMQP ++G
Sbjct: 886 YYNLMQPSAEYLG 898
>04_01_0625 -
8222105-8222462,8222574-8222926,8223029-8223204,
8223318-8223555,8226983-8227423
Length = 521
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 495 KLKQLFIKRNFVSKWHRYNVRFPNGYYYRSCAG 397
+L + + +N V +W ++ R+ Y+ RSC G
Sbjct: 444 RLPSISVMQNDVQEWEKFMKRYSRAYFRRSCIG 476
>10_08_0849 +
21040043-21040199,21040620-21040678,21040925-21042494,
21042583-21042710,21042793-21043033,21043160-21043710
Length = 901
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 326 GDRHSLMQPEKSFIGLIKLADAEDPAQD 409
G H+ PE+ + L+K D E+PAQ+
Sbjct: 531 GKCHNAFSPEEPEVCLVKAVDVEEPAQE 558
>02_05_0815 - 31977721-31977813,31978078-31978482,31978843-31979349
Length = 334
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 2 GAPHDVWYPSQWTISSPPPRPTLTHSG 82
GA + W Q+ +SSPP PT SG
Sbjct: 81 GAVEEFWDERQYPVSSPPAAPTPAASG 107
>01_06_0261 +
27978341-27978391,27978539-27978683,27978794-27978861,
27979630-27980073,27980163-27980681,27981002-27981214,
27981650-27981805,27982753-27982941
Length = 594
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/43 (32%), Positives = 28/43 (65%)
Frame = +3
Query: 222 NHPTLRKFSTNQIPVSLHQLCSSELATDSPLGTPAEIDTLSCS 350
N+P K+S+N++P S +++ A+D+ G+ + +DT+S S
Sbjct: 183 NYPARPKYSSNKLPSSKASR-NTKSASDTIKGSSSALDTMSTS 224
>07_01_0690 + 5221957-5223951
Length = 664
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/66 (28%), Positives = 25/66 (37%)
Frame = +2
Query: 44 SSPPPRPTLTHSGHVRVHHTGVYLVYAQIYYLDSHDVISWVLHRTNPESDGRDTLLQCAQ 223
S+PPP+P L + V G A + DS L PE R+ + Q
Sbjct: 197 SAPPPQPVLPPAAVVNSVSDGAVPPPAPVVNCDSDVTDEDELQSFVPEFSARNLFVSLPQ 256
Query: 224 SSHSTE 241
SH E
Sbjct: 257 GSHEAE 262
>01_01_0144 - 1316626-1316658,1317580-1318863
Length = 438
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 50 PPPRPTLTHSGHVRVHHTGVYLVYAQIYYL 139
PP R TL G + H G+ ++YA YL
Sbjct: 87 PPARTTLLGIGEISGTHKGIVVIYAHRCYL 116
>12_01_0611 -
5034481-5034709,5034863-5035020,5035231-5035475,
5036686-5036983,5037644-5038482,5039763-5039823
Length = 609
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 32 QWTISSPPPRPTLTHSGHVRVHHTGVYLV 118
QW + P PT SG HH+G LV
Sbjct: 45 QWNSPNAAPAPTAPRSGSGAFHHSGNTLV 73
>11_04_0110 -
13539059-13539751,13539857-13540383,13541925-13542437,
13542606-13542786
Length = 637
Score = 27.5 bits (58), Expect = 9.9
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Frame = +2
Query: 44 SSPPPRPTLTHSGHVRVHH-TGVYLVYAQIYYLDSHDVISWVLHRTNPESDGRDTLLQCA 220
SSP +PT H G+ +H T I HD + L R RD+ L A
Sbjct: 53 SSPAAQPTAKHHGNCNIHEVTAERWTLLHIAAAQGHDDLIDELCR-------RDSGLLSA 105
Query: 221 QSSHSTEVLDKPNSCFSAS--ALFLRAGDRLAVRNTGGDR 334
SS D P C + + A +RA DRLA N DR
Sbjct: 106 ASSSG----DTPLHCAARAGHAGAVRAIDRLARANVEEDR 141
>05_03_0425 -
13808840-13809414,13809552-13809765,13810268-13811317,
13811616-13811687,13812075-13812334,13812647-13812731
Length = 751
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 378 NWLTPKIRRKTCSNIRSETGHCN 446
N + P++R SNI+ ETG CN
Sbjct: 124 NSIFPRLRTMNNSNIKQETGLCN 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,205,295
Number of Sequences: 37544
Number of extensions: 319583
Number of successful extensions: 1000
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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