Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0315
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31825| Best HMM Match : TNF (HMM E-Value=5.3e-08) 36 0.038
SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11) 32 0.47
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 30 1.4
SB_39106| Best HMM Match : Prion (HMM E-Value=1.2) 30 1.4
SB_58255| Best HMM Match : zf-C2H2 (HMM E-Value=2.3) 29 3.3
SB_46986| Best HMM Match : HEAT (HMM E-Value=2.5e-06) 29 3.3
SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30) 29 3.3
SB_441| Best HMM Match : zf-C2H2 (HMM E-Value=5.5) 28 5.8
SB_55907| Best HMM Match : Extensin_2 (HMM E-Value=0.73) 28 5.8
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23) 28 7.7
>SB_31825| Best HMM Match : TNF (HMM E-Value=5.3e-08)
Length = 371
Score = 35.5 bits (78), Expect = 0.038
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 77 SGHVRVHHTGVYLVYAQIYYLD 142
+G + +HH GVY VYAQ++Y D
Sbjct: 152 TGSIIIHHPGVYFVYAQLFYTD 173
>SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11)
Length = 476
Score = 31.9 bits (69), Expect = 0.47
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 74 HSGHVRVHHTGVYLVYAQIYYLD 142
H+G + + +G Y VY+Q+YY D
Sbjct: 190 HTGEITIEKSGFYFVYSQMYYYD 212
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 260 NLVCRELP*SGMIVHIEEGCLFHPTQDSYGAIPKISRRD 144
N V +E S ++V EE F P + GA+P ++R+D
Sbjct: 4627 NAVGKETCRSQLVVEAEEFAPFFPEDEGQGAVPVVTRQD 4665
>SB_39106| Best HMM Match : Prion (HMM E-Value=1.2)
Length = 523
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 83 HVRVHHTGV-YLVYAQIYYLDSHDVISWVLHRTNPESDGRDTL 208
H+ V GV YL+ +++S++ ISW L+ +N + G+D +
Sbjct: 138 HMNVRLIGVNYLMNNPERFIESNEEISWALYLSNMSTQGQDKI 180
>SB_58255| Best HMM Match : zf-C2H2 (HMM E-Value=2.3)
Length = 213
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 505 NKVEIETTLYKEKLRFKMAPLQCPVSERIL 416
NK + T Y+ K F M+ LQC SER+L
Sbjct: 21 NKFMLNQTKYEHKKHFCMSCLQCFSSERVL 50
>SB_46986| Best HMM Match : HEAT (HMM E-Value=2.5e-06)
Length = 486
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +3
Query: 210 FNVHNHPTLRKFSTNQIPVSLHQLCSSELATDSPLGTPAEIDT 338
+ +++HP K T +P +LH+ + T G P+++ +
Sbjct: 272 YGIYDHPEFDKLLTKHVPANLHRQIHDIVETLRTKGLPSDVSS 314
>SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)
Length = 508
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2
Query: 480 FIKRNFVSKWHRYNVRFPNGYYYRSCAG 397
FI RN SKW+ FP Y+ CAG
Sbjct: 262 FIHRNPSSKWYVSKKDFPEKYFPNYCAG 289
>SB_441| Best HMM Match : zf-C2H2 (HMM E-Value=5.5)
Length = 336
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 505 NKVEIETTLYKEKLRFKMAPLQCPVSERIL 416
NK + T ++ K F M+ LQC SER+L
Sbjct: 267 NKFMLNQTKHEHKKHFCMSCLQCSSSERVL 296
>SB_55907| Best HMM Match : Extensin_2 (HMM E-Value=0.73)
Length = 469
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/59 (37%), Positives = 29/59 (49%)
Frame = +2
Query: 20 WYPSQWTISSPPPRPTLTHSGHVRVHHTGVYLVYAQIYYLDSHDVISWVLHRTNPESDG 196
WY +T S+PPP T SG + + G +VY +Y L + VI RTN DG
Sbjct: 390 WYTHLYTPSTPPPSYVPTQSG---MGYKG-DVVYPPLYALYPNTVI-----RTNTVGDG 439
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +2
Query: 20 WYPSQWTISSPPPRPTLTHSGHVRVHHTGVYLVYAQIYYLDSHDVISWVLHRTNPESDG 196
WY +T S+PPP T SG + + G ++Y +Y L + VI RTN DG
Sbjct: 144 WYTHLYTPSTPPPSYVPTQSG---MGYKG-DVIYPPLYALYPNTVI-----RTNTVGDG 193
>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4085
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/50 (24%), Positives = 29/50 (58%)
Frame = +2
Query: 113 LVYAQIYYLDSHDVISWVLHRTNPESDGRDTLLQCAQSSHSTEVLDKPNS 262
LV+++ Y+L + D++ + + NP + + L +C + H E++ + +S
Sbjct: 786 LVFSRFYFLSNEDLLDILANNKNPNA-VQPHLRKCFDNIHQLEIVRQAHS 834
>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
Length = 1531
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +3
Query: 318 TPAEIDTLSCSQRKAS*VSLNWLTPKIRRKTCSNIRSETGHCNGAILKRSFSL 476
T L+ + R+ S S + C N+R H NG LK +FS+
Sbjct: 11 TTVSTHILAATPRRQSGTSFEERLGNFLQTVCVNLRFTACHVNGTTLKATFSM 63
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,065,384
Number of Sequences: 59808
Number of extensions: 369134
Number of successful extensions: 1060
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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