Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0315
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067210-2|AAC16984.1|  308|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z79598-4|CAB01868.2|  745|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL132853-2|CAB60441.2|  424|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z69664-4|CAA93517.1|  483|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U49830-2|AAV58878.1|  324|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U49830-1|AAK31483.1|  458|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U64857-7|AAC25861.2|  373|Caenorhabditis elegans Groundhog (hedg...    28   6.7  
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical...    28   6.7  
AC024818-4|AAF60782.5|  457|Caenorhabditis elegans Hypothetical ...    28   6.7  
U23484-15|AAC46762.1|  299|Caenorhabditis elegans Hypothetical p...    27   8.9  
AF025457-8|AAB70968.2|  383|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF067210-2|AAC16984.1|  308|Caenorhabditis elegans Hypothetical
           protein C04F1.1 protein.
          Length = 308

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/99 (19%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
 Frame = +2

Query: 104 GVYLVYAQIYYLDSHDVISWVLHRTNPESDGRD-TLLQCAQSSHSTEVLDKPNSCFSASA 280
           G+YL+Y+ + +  S D   W+      ESD  +  L     +    E+    + CFS + 
Sbjct: 13  GIYLLYSLLAFYFSDDYTDWI------ESDQDEIDLKSITLNGDKIEIFTNWHHCFSENM 66

Query: 281 LFLRAGDRLAVRNTGGDRHSLMQPEKSFIGLIKLADAED 397
           + +   ++      G  R   ++ + + +G++ L ++++
Sbjct: 67  MNINDSEKFWDNFVGVSRKCDLEAKVNQLGIVTLKNSDE 105


>Z79598-4|CAB01868.2|  745|Caenorhabditis elegans Hypothetical
           protein C44H4.4 protein.
          Length = 745

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 284 TELMQRNRNLVCRELP*SGMIVHIEEGCLFHPTQD 180
           T L +  R+L    LP    IVH+E G  +HP  D
Sbjct: 443 TNLFESERHL--HSLPSDQQIVHVEFGAFYHPHSD 475


>AL132853-2|CAB60441.2|  424|Caenorhabditis elegans Hypothetical
           protein Y80D3A.4 protein.
          Length = 424

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +3

Query: 183 LSRMEETPFFNVHNHPTLRKFSTNQIPVSLHQLCSSE---LATDSPLGTPAEIDTLSCSQ 353
           + ++   PFF VH  PTL +  T Q  +  H         L   SP  TP   D+L    
Sbjct: 123 IEKLVGRPFFVVHCKPTLIEIHTQQNLIDCHDFVEKGRRILFEGSP--TPWGSDSLQKLA 180

Query: 354 RKAS*VSLNWLTPKIR 401
           R    ++ N+  PK++
Sbjct: 181 RGVRKLAGNYSNPKVK 196


>Z69664-4|CAA93517.1|  483|Caenorhabditis elegans Hypothetical
           protein K04D7.3 protein.
          Length = 483

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 2   GAPHDVWYPSQWTISSPPPRPTLT 73
           GA  D+W    W +SSPP   T +
Sbjct: 317 GATGDIWAHDHWNLSSPPDMVTFS 340


>U49830-2|AAV58878.1|  324|Caenorhabditis elegans Hypothetical
           protein C33F10.4b protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 80  GHVRVHHTGVYLVYAQIYYLDSHDVISWVLHRTNPESDGRDTLLQCAQS 226
           G +R  H G  L+   I+ + +  +I WV+   NP S   ++   C Q+
Sbjct: 77  GEIRYLHDGTILLLVTIHNITNQPMIDWVI-SINPTSIFPNSSSSCCQT 124


>U49830-1|AAK31483.1|  458|Caenorhabditis elegans Hypothetical
           protein C33F10.4a protein.
          Length = 458

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 80  GHVRVHHTGVYLVYAQIYYLDSHDVISWVLHRTNPESDGRDTLLQCAQS 226
           G +R  H G  L+   I+ + +  +I WV+   NP S   ++   C Q+
Sbjct: 77  GEIRYLHDGTILLLVTIHNITNQPMIDWVI-SINPTSIFPNSSSSCCQT 124


>U64857-7|AAC25861.2|  373|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 8 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = -2

Query: 438 VRFPNGYYYRSCAGSSASANLMRPMKLFSGCMRECLSPPVFLTASLSPALRNRADAEKQE 259
           VR P+G+ + + A S+   +   P        +   +PP +LT   +PA  +  D +   
Sbjct: 29  VRLPSGFTFPADAASNFQRDAYIPATFAPPSEKILQAPPRYLTGEHNPAYAHNTDVQGMN 88

Query: 258 F 256
           +
Sbjct: 89  Y 89


>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
           protein Y39B6A.18 protein.
          Length = 1352

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 17  VWYPSQWTISSPPPRPTLTHSGHVRVHHTG 106
           +++ SQ TIS PPP P  ++SG V    TG
Sbjct: 757 LFFASQQTISVPPPNPQ-SNSGGVNTGGTG 785


>AC024818-4|AAF60782.5|  457|Caenorhabditis elegans Hypothetical
           protein Y54H5A.4 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 342 RECLSPPVFLTASLSPALRNRADAEKQEFGLSRTSVEWDDC 220
           RE LSP     A++ P    + +A +++F +  T V   DC
Sbjct: 216 REGLSPCDVFHAAVMPCFDKKLEASREQFKVDGTDVRETDC 256


>U23484-15|AAC46762.1|  299|Caenorhabditis elegans Hypothetical
           protein EEED8.2 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 165 YCTVRILSRMEETPFFNVHNHPTLRKFS 248
           Y   RI +++EE  FF++H +P  R  S
Sbjct: 124 YDIERIFAKLEEESFFSLHENPIQRTIS 151


>AF025457-8|AAB70968.2|  383|Caenorhabditis elegans Hypothetical
           protein C08E3.9 protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 210 FNVHNHPTLRKFSTNQIPVSLHQLCSSELATDSPLGTPAEI 332
           F+  NH      S NQ+P SL ++  SE    S +GT  +I
Sbjct: 54  FSNGNHDLDYDRSVNQVPKSLPEMPKSEKTEISEIGTQVDI 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,050,995
Number of Sequences: 27780
Number of extensions: 283876
Number of successful extensions: 939
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)