Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0315
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -2

Query: 408  SCAGSSASANLMRPMKLFSGCMRE-CLSPPVFLTASLSPALRNRADAEKQEFG 253
            S AG   +  L+         M E C SPP   T+  S + R R   ++Q  G
Sbjct: 1726 SAAGLHPNNTLLHSFMYHEHAMTEGCASPPPAATSMKSVSSRRRQQRKQQTPG 1778


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -2

Query: 408  SCAGSSASANLMRPMKLFSGCMRE-CLSPPVFLTASLSPALRNRADAEKQEFG 253
            S AG   +  L+         M E C SPP   T+  S + R R   ++Q  G
Sbjct: 1722 SAAGLHPNNTLLHSFMYHEHAMTEGCASPPPAATSMKSVSSRRRQQRKQQTPG 1774


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 195 EETPFFNVHNHPTLRKFSTNQIPVS 269
           E+T   + +N PT+ K S  + P S
Sbjct: 865 EQTSISHENNQPTMNKCSDRKRPAS 889


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 194 GRDTLLQCAQSSHST 238
           G   LLQCA S++ST
Sbjct: 764 GSQGLLQCATSNYST 778


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,634
Number of Sequences: 438
Number of extensions: 3481
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)