Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0315
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34680.1 68415.m04260 leucine-rich repeat family protein cont...    29   3.6  
At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family...    28   6.3  
At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    27   8.3  

>At2g34680.1 68415.m04260 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; identical to cDNA hypothetical protein
           (AIR9) mRNA, partial cds GI:3695020
          Length = 1661

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = +2

Query: 155 ISWVLHRTNPESDGRDTLLQCAQSSHSTEVLDKPNSCFSASALFLRAGDRLAVRNTGGDR 334
           +S    RT+P       L + + SS S + + KP+   S  ++ +  G R   ++TG   
Sbjct: 102 VSTTASRTDPVRRSLPELRKSSVSSLSAKTVSKPSLSESKKSVPVSPGSRSLTKSTG--- 158

Query: 335 HSLMQPEKS 361
            SL +PE S
Sbjct: 159 FSLSKPESS 167


>At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family
           protein common family member:At2g33490 [Arabidopsis
           thaliana]
          Length = 608

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
 Frame = +2

Query: 56  PRPTLTHSGHVRVHHTGVYLVYAQIYYLDSHDVISWVLHRTNPESDGRDTLLQCAQSSHS 235
           PRP+ T    V   H   Y V  +  YL SH   + +     P+   R   L+ A  S +
Sbjct: 298 PRPSTTRPAAVNADHREEYPVSTRDKYLSSHS--APLFPEKKPDVSER---LRQANPSFN 352

Query: 236 TEVLDKPNSCFSASALFLRAGDRLAVRNTGGDRHSL-MQPEKS 361
             VL  PN    +  +      R    + G   HS  ++P KS
Sbjct: 353 AYVLPTPNDSRYSKPVSQALNPRPTNHSAGNIWHSSPLEPIKS 395


>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 210 FNVHNHPTLRKFSTNQIPVSLHQLCSSELATDSPL 314
           F VH+  +L++FS  ++   LH++  S +  D+PL
Sbjct: 265 FRVHSQ-SLKRFSLKRVSSFLHEVALSGVVIDAPL 298


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,043,219
Number of Sequences: 28952
Number of extensions: 257823
Number of successful extensions: 776
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)