Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0313
         (671 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    25   0.43 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.7  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   2.3  

>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 116 LCNIDSLIHSHYFIFQIRPFLRIRESAILTYN 21
           +C  D  ++S Y  ++I  F+R RE+ + T+N
Sbjct: 102 ICFDDVDLNSLYSSYEITRFIRSRETDVYTHN 133


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 231  WYHLVVSQHNARSHGILG*EF 169
            WYHL V+ HN     +   EF
Sbjct: 1559 WYHLRVTAHNNAGFNVAEYEF 1579



 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 414  TLQFEIEMIDWRLEDLSPTKNKGILRHIL 500
            T+ ++ E  DW    + PT  K  L  +L
Sbjct: 1430 TIHYKPEFGDWETVQIGPTVEKYTLEKLL 1458


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 341 NFTLLHCRHTNFPCFYYTIFAQT 273
           NF +LHC +T + C Y  I   T
Sbjct: 151 NF-MLHCNNTTWRCLYRWIVLYT 172


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,906
Number of Sequences: 336
Number of extensions: 4323
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)